miRNA display CGI


Results 61 - 77 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 36266 0.76 0.625949
Target:  5'- gUCGCcAUCAUCUCUcggUCGGcAGAGCCGAg -3'
miRNA:   3'- -GGCGaUGGUAGAGG---AGCC-UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 35198 0.71 0.862589
Target:  5'- aCCGacgACgGUCaUCUCGGAGGACCGc -3'
miRNA:   3'- -GGCga-UGgUAGaGGAGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 32840 0.69 0.930849
Target:  5'- aCCGCcACCAgUCgaaCCgCGGGGAGCUGGc -3'
miRNA:   3'- -GGCGaUGGU-AGa--GGaGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 32511 0.71 0.869857
Target:  5'- aCCGCgcgcgGCCggGUC-CCUCGGAGAccuaGCCa- -3'
miRNA:   3'- -GGCGa----UGG--UAGaGGAGCCUCU----UGGcu -5'
16223 3' -54.4 NC_004065.1 + 32281 0.69 0.940379
Target:  5'- cCCGCUGuCCgcguccucgGUCUCCUCGucGGAGcCCGAc -3'
miRNA:   3'- -GGCGAU-GG---------UAGAGGAGCc-UCUU-GGCU- -5'
16223 3' -54.4 NC_004065.1 + 31979 0.66 0.981794
Target:  5'- uCCGCaacuCCAUCcCCUUGGAaccGCCGGc -3'
miRNA:   3'- -GGCGau--GGUAGaGGAGCCUcu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 28713 0.7 0.888462
Target:  5'- cCCGCcACCAucauccUCUCCUCcucccccggccgccGGAGGGCCa- -3'
miRNA:   3'- -GGCGaUGGU------AGAGGAG--------------CCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 25395 0.68 0.956781
Target:  5'- gCCGCUGCCAaa--CUCGGcGGuCCGAa -3'
miRNA:   3'- -GGCGAUGGUagagGAGCCuCUuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 24429 0.66 0.987017
Target:  5'- gCUGCUGCCGaCguagaCCUCGGGaGGCUGGc -3'
miRNA:   3'- -GGCGAUGGUaGa----GGAGCCUcUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 19838 0.67 0.977524
Target:  5'- aCGCUccucCCGUCUCCgCGGAGuacuCCa- -3'
miRNA:   3'- gGCGAu---GGUAGAGGaGCCUCuu--GGcu -5'
16223 3' -54.4 NC_004065.1 + 17980 0.67 0.975132
Target:  5'- gCCGCgcgACC-UCUugggUgUCGGGGAGCUGGa -3'
miRNA:   3'- -GGCGa--UGGuAGA----GgAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 15124 0.67 0.975132
Target:  5'- aUCG-UACCAUaaCCUaCGGAGAACCa- -3'
miRNA:   3'- -GGCgAUGGUAgaGGA-GCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 12421 0.79 0.444022
Target:  5'- -aGCUACCGUCUCCUCGaauggcaGAGAGgCGAu -3'
miRNA:   3'- ggCGAUGGUAGAGGAGC-------CUCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 7843 0.7 0.896871
Target:  5'- gCGCaACCAUCagCCaUGGAGGGCCGc -3'
miRNA:   3'- gGCGaUGGUAGa-GGaGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 6659 0.78 0.527915
Target:  5'- -aGCUACCGUCUCCcuggcaggaugCGGGGAACCcGAg -3'
miRNA:   3'- ggCGAUGGUAGAGGa----------GCCUCUUGG-CU- -5'
16223 3' -54.4 NC_004065.1 + 5561 0.67 0.977524
Target:  5'- -aGCUACCAgCUCC-CGGuuGAGCUGc -3'
miRNA:   3'- ggCGAUGGUaGAGGaGCCu-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 2102 0.68 0.956781
Target:  5'- aCCGaCUGCcCGUCUCCuUCGGAGua--GAa -3'
miRNA:   3'- -GGC-GAUG-GUAGAGG-AGCCUCuuggCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.