miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 35198 0.71 0.862589
Target:  5'- aCCGacgACgGUCaUCUCGGAGGACCGc -3'
miRNA:   3'- -GGCga-UGgUAGaGGAGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 124792 0.71 0.869857
Target:  5'- gCGCcACCAUCUCCUCGuccGAcguccGCCGGg -3'
miRNA:   3'- gGCGaUGGUAGAGGAGCcu-CU-----UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 186190 0.71 0.872708
Target:  5'- uCCGCUcuguccggccagcugACCAagUUCUUGGAGGACCa- -3'
miRNA:   3'- -GGCGA---------------UGGUagAGGAGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 226428 0.71 0.876923
Target:  5'- -gGCgGCCGUCUCCa-GGAGAguccucGCCGAu -3'
miRNA:   3'- ggCGaUGGUAGAGGagCCUCU------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 28713 0.7 0.888462
Target:  5'- cCCGCcACCAucauccUCUCCUCcucccccggccgccGGAGGGCCa- -3'
miRNA:   3'- -GGCGaUGGU------AGAGGAG--------------CCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 102554 0.7 0.890434
Target:  5'- gCCGCgcccgACCAcCUCCcCGGGGAgAUCGAc -3'
miRNA:   3'- -GGCGa----UGGUaGAGGaGCCUCU-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 43474 0.68 0.953007
Target:  5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3'
miRNA:   3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 39271 0.68 0.948606
Target:  5'- gCCGCcACCGUCcCCaUCagaaccggcgaauGGGGAGCCGGc -3'
miRNA:   3'- -GGCGaUGGUAGaGG-AG-------------CCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 32281 0.69 0.940379
Target:  5'- cCCGCUGuCCgcguccucgGUCUCCUCGucGGAGcCCGAc -3'
miRNA:   3'- -GGCGAU-GG---------UAGAGGAGCc-UCUU-GGCU- -5'
16223 3' -54.4 NC_004065.1 + 120206 0.69 0.935726
Target:  5'- gCC-CUGCCgAUCUUCUUGGGcGGACCGc -3'
miRNA:   3'- -GGcGAUGG-UAGAGGAGCCU-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 92051 0.7 0.914298
Target:  5'- gCGCUcgaGgCAUCUCacgcgcgCUCGGAGGGCCGc -3'
miRNA:   3'- gGCGA---UgGUAGAG-------GAGCCUCUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 161495 0.7 0.896871
Target:  5'- uCCGCcGCCGcCUCCUCGGccu-CCGGg -3'
miRNA:   3'- -GGCGaUGGUaGAGGAGCCucuuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 122480 0.72 0.831617
Target:  5'- cCCGCgACCA-CaCCUCGGAGAACaCGu -3'
miRNA:   3'- -GGCGaUGGUaGaGGAGCCUCUUG-GCu -5'
16223 3' -54.4 NC_004065.1 + 88206 0.72 0.831617
Target:  5'- aCCGUccuCCGUCUCCgacgCGGcuaacaGGAGCCGGa -3'
miRNA:   3'- -GGCGau-GGUAGAGGa---GCC------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 181464 0.73 0.761956
Target:  5'- cCCGCUuUCAUCUCCaucgucgCGGAGAAUCa- -3'
miRNA:   3'- -GGCGAuGGUAGAGGa------GCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 210122 0.73 0.751741
Target:  5'- aCCGCUACCGUCuucgauUCCUCGGcggcgacGGggUgGAu -3'
miRNA:   3'- -GGCGAUGGUAG------AGGAGCC-------UCuuGgCU- -5'
16223 3' -54.4 NC_004065.1 + 194462 0.74 0.73382
Target:  5'- uCCGCcugugGCCGcCUUCUCGGAGAugguuauccaACCGAc -3'
miRNA:   3'- -GGCGa----UGGUaGAGGAGCCUCU----------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 36266 0.76 0.625949
Target:  5'- gUCGCcAUCAUCUCUcggUCGGcAGAGCCGAg -3'
miRNA:   3'- -GGCGaUGGUAGAGG---AGCC-UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 6659 0.78 0.527915
Target:  5'- -aGCUACCGUCUCCcuggcaggaugCGGGGAACCcGAg -3'
miRNA:   3'- ggCGAUGGUAGAGGa----------GCCUCUUGG-CU- -5'
16223 3' -54.4 NC_004065.1 + 106045 0.66 0.987017
Target:  5'- aCGCcgAUCGUgaCCaaGGAGGACCGGg -3'
miRNA:   3'- gGCGa-UGGUAgaGGagCCUCUUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.