Results 41 - 60 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 88036 | 0.68 | 0.953394 |
Target: 5'- gCCGCgguaucgucgucaucGCCGUCgCCUCcggagGGAGGACCGu -3' miRNA: 3'- -GGCGa--------------UGGUAGaGGAG-----CCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 25395 | 0.68 | 0.956781 |
Target: 5'- gCCGCUGCCAaa--CUCGGcGGuCCGAa -3' miRNA: 3'- -GGCGAUGGUagagGAGCCuCUuGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 55665 | 0.68 | 0.956781 |
Target: 5'- aCCaCUACCAccaUCUCCUCcGGcGGACCu- -3' miRNA: 3'- -GGcGAUGGU---AGAGGAG-CCuCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 2102 | 0.68 | 0.956781 |
Target: 5'- aCCGaCUGCcCGUCUCCuUCGGAGua--GAa -3' miRNA: 3'- -GGC-GAUG-GUAGAGG-AGCCUCuuggCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 193851 | 0.68 | 0.960343 |
Target: 5'- cCUGCUGCCGUCgcuucgUCCgCGGcGAcucccGCCGAu -3' miRNA: 3'- -GGCGAUGGUAG------AGGaGCCuCU-----UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 120799 | 0.7 | 0.909089 |
Target: 5'- aCCGCcGCCGUCUCCcgUCGccGAGcaggaagaGGCCGAg -3' miRNA: 3'- -GGCGaUGGUAGAGG--AGC--CUC--------UUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 7843 | 0.7 | 0.896871 |
Target: 5'- gCGCaACCAUCagCCaUGGAGGGCCGc -3' miRNA: 3'- gGCGaUGGUAGa-GGaGCCUCUUGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 107374 | 0.7 | 0.890434 |
Target: 5'- gCCGC--CCGUCUUCUCGgGAGAGgUGAc -3' miRNA: 3'- -GGCGauGGUAGAGGAGC-CUCUUgGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 6659 | 0.78 | 0.527915 |
Target: 5'- -aGCUACCGUCUCCcuggcaggaugCGGGGAACCcGAg -3' miRNA: 3'- ggCGAUGGUAGAGGa----------GCCUCUUGG-CU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 36266 | 0.76 | 0.625949 |
Target: 5'- gUCGCcAUCAUCUCUcggUCGGcAGAGCCGAg -3' miRNA: 3'- -GGCGaUGGUAGAGG---AGCC-UCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 194462 | 0.74 | 0.73382 |
Target: 5'- uCCGCcugugGCCGcCUUCUCGGAGAugguuauccaACCGAc -3' miRNA: 3'- -GGCGa----UGGUaGAGGAGCCUCU----------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 210122 | 0.73 | 0.751741 |
Target: 5'- aCCGCUACCGUCuucgauUCCUCGGcggcgacGGggUgGAu -3' miRNA: 3'- -GGCGAUGGUAG------AGGAGCC-------UCuuGgCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 181464 | 0.73 | 0.761956 |
Target: 5'- cCCGCUuUCAUCUCCaucgucgCGGAGAAUCa- -3' miRNA: 3'- -GGCGAuGGUAGAGGa------GCCUCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 88206 | 0.72 | 0.831617 |
Target: 5'- aCCGUccuCCGUCUCCgacgCGGcuaacaGGAGCCGGa -3' miRNA: 3'- -GGCGau-GGUAGAGGa---GCC------UCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 122480 | 0.72 | 0.831617 |
Target: 5'- cCCGCgACCA-CaCCUCGGAGAACaCGu -3' miRNA: 3'- -GGCGaUGGUaGaGGAGCCUCUUG-GCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 159925 | 0.71 | 0.854368 |
Target: 5'- gCCGCUGCCGgugcugcUCgucgCCUCGGGGu-CCGc -3' miRNA: 3'- -GGCGAUGGU-------AGa---GGAGCCUCuuGGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 178424 | 0.71 | 0.862589 |
Target: 5'- aCCGCUcAUgAUCaUCUUCGGGGucGCCGAa -3' miRNA: 3'- -GGCGA-UGgUAG-AGGAGCCUCu-UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 163624 | 0.71 | 0.862589 |
Target: 5'- aUGCUGCgCGUCUCCUCGGucagcGAGCg-- -3' miRNA: 3'- gGCGAUG-GUAGAGGAGCCu----CUUGgcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 32511 | 0.71 | 0.869857 |
Target: 5'- aCCGCgcgcgGCCggGUC-CCUCGGAGAccuaGCCa- -3' miRNA: 3'- -GGCGa----UGG--UAGaGGAGCCUCU----UGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 170469 | 0.71 | 0.876923 |
Target: 5'- cCCGUcGCCAUCggCUUCGGGGggUCu- -3' miRNA: 3'- -GGCGaUGGUAGa-GGAGCCUCuuGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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