Results 61 - 77 of 77 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 181464 | 0.73 | 0.761956 |
Target: 5'- cCCGCUuUCAUCUCCaucgucgCGGAGAAUCa- -3' miRNA: 3'- -GGCGAuGGUAGAGGa------GCCUCUUGGcu -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 210122 | 0.73 | 0.751741 |
Target: 5'- aCCGCUACCGUCuucgauUCCUCGGcggcgacGGggUgGAu -3' miRNA: 3'- -GGCGAUGGUAG------AGGAGCC-------UCuuGgCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 194462 | 0.74 | 0.73382 |
Target: 5'- uCCGCcugugGCCGcCUUCUCGGAGAugguuauccaACCGAc -3' miRNA: 3'- -GGCGa----UGGUaGAGGAGCCUCU----------UGGCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 36266 | 0.76 | 0.625949 |
Target: 5'- gUCGCcAUCAUCUCUcggUCGGcAGAGCCGAg -3' miRNA: 3'- -GGCGaUGGUAGAGG---AGCC-UCUUGGCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 6659 | 0.78 | 0.527915 |
Target: 5'- -aGCUACCGUCUCCcuggcaggaugCGGGGAACCcGAg -3' miRNA: 3'- ggCGAUGGUAGAGGa----------GCCUCUUGG-CU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 163624 | 0.71 | 0.862589 |
Target: 5'- aUGCUGCgCGUCUCCUCGGucagcGAGCg-- -3' miRNA: 3'- gGCGAUG-GUAGAGGAGCCu----CUUGgcu -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 32511 | 0.71 | 0.869857 |
Target: 5'- aCCGCgcgcgGCCggGUC-CCUCGGAGAccuaGCCa- -3' miRNA: 3'- -GGCGa----UGG--UAGaGGAGCCUCU----UGGcu -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 176541 | 0.69 | 0.935726 |
Target: 5'- -gGUcACCAUCUUCcCGGAGAGCuCGGc -3' miRNA: 3'- ggCGaUGGUAGAGGaGCCUCUUG-GCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 32840 | 0.69 | 0.930849 |
Target: 5'- aCCGCcACCAgUCgaaCCgCGGGGAGCUGGc -3' miRNA: 3'- -GGCGaUGGU-AGa--GGaGCCUCUUGGCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 68514 | 0.69 | 0.920419 |
Target: 5'- gCgGCggACgCAUCUCC-CGGAG-GCCGAg -3' miRNA: 3'- -GgCGa-UG-GUAGAGGaGCCUCuUGGCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 211453 | 0.7 | 0.914866 |
Target: 5'- gCCcCU-CCG-CUCCUCGGAGGagucGCCGGa -3' miRNA: 3'- -GGcGAuGGUaGAGGAGCCUCU----UGGCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 101284 | 0.7 | 0.914866 |
Target: 5'- gCCGCUGCCGacggCUgCCUCGGcGGccaGCCGc -3' miRNA: 3'- -GGCGAUGGUa---GA-GGAGCCuCU---UGGCu -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 120799 | 0.7 | 0.909089 |
Target: 5'- aCCGCcGCCGUCUCCcgUCGccGAGcaggaagaGGCCGAg -3' miRNA: 3'- -GGCGaUGGUAGAGG--AGC--CUC--------UUGGCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 7843 | 0.7 | 0.896871 |
Target: 5'- gCGCaACCAUCagCCaUGGAGGGCCGc -3' miRNA: 3'- gGCGaUGGUAGa-GGaGCCUCUUGGCu -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 107374 | 0.7 | 0.890434 |
Target: 5'- gCCGC--CCGUCUUCUCGgGAGAGgUGAc -3' miRNA: 3'- -GGCGauGGUAGAGGAGC-CUCUUgGCU- -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 170469 | 0.71 | 0.876923 |
Target: 5'- cCCGUcGCCAUCggCUUCGGGGggUCu- -3' miRNA: 3'- -GGCGaUGGUAGa-GGAGCCUCuuGGcu -5' |
|||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 12421 | 0.79 | 0.444022 |
Target: 5'- -aGCUACCGUCUCCUCGaauggcaGAGAGgCGAu -3' miRNA: 3'- ggCGAUGGUAGAGGAGC-------CUCUUgGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home