miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 3' -54.4 NC_004065.1 + 115831 0.67 0.966847
Target:  5'- aCGaCUgaGCCAUCUCCUCGc--GGCCGGc -3'
miRNA:   3'- gGC-GA--UGGUAGAGGAGCcucUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 179018 0.67 0.972559
Target:  5'- gCCGCgg-CGUCUCCucccaucgcUCGGAGGGCUa- -3'
miRNA:   3'- -GGCGaugGUAGAGG---------AGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 107145 0.66 0.979742
Target:  5'- aCCGCcACCAUCUgCUgGGcagcucgcagguGGGGCUGGa -3'
miRNA:   3'- -GGCGaUGGUAGAgGAgCC------------UCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 181464 0.73 0.761956
Target:  5'- cCCGCUuUCAUCUCCaucgucgCGGAGAAUCa- -3'
miRNA:   3'- -GGCGAuGGUAGAGGa------GCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 212270 0.66 0.987017
Target:  5'- gCCGCUGCaCA-CUCCUCcGAGGAa-GAa -3'
miRNA:   3'- -GGCGAUG-GUaGAGGAGcCUCUUggCU- -5'
16223 3' -54.4 NC_004065.1 + 186190 0.71 0.872708
Target:  5'- uCCGCUcuguccggccagcugACCAagUUCUUGGAGGACCa- -3'
miRNA:   3'- -GGCGA---------------UGGUagAGGAGCCUCUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 226428 0.71 0.876923
Target:  5'- -gGCgGCCGUCUCCa-GGAGAguccucGCCGAu -3'
miRNA:   3'- ggCGaUGGUAGAGGagCCUCU------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 113712 0.74 0.746118
Target:  5'- gCCGCUGCCGcCgccgacgccgacaCCUCGGAGAacuccggcgaggagGCCGAg -3'
miRNA:   3'- -GGCGAUGGUaGa------------GGAGCCUCU--------------UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 146274 0.66 0.987017
Target:  5'- uCCGCgcgaguuccugGCCuucGUCUUCUCGGAcGACCa- -3'
miRNA:   3'- -GGCGa----------UGG---UAGAGGAGCCUcUUGGcu -5'
16223 3' -54.4 NC_004065.1 + 120206 0.69 0.935726
Target:  5'- gCC-CUGCCgAUCUUCUUGGGcGGACCGc -3'
miRNA:   3'- -GGcGAUGG-UAGAGGAGCCU-CUUGGCu -5'
16223 3' -54.4 NC_004065.1 + 162159 0.66 0.985424
Target:  5'- -aGgU-CCGUCagcCCUCGGAGGAUCGGa -3'
miRNA:   3'- ggCgAuGGUAGa--GGAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 117906 0.66 0.983685
Target:  5'- cCCGCUGCagaaagagggaUAUCgCCUCGG-GAuCCGGu -3'
miRNA:   3'- -GGCGAUG-----------GUAGaGGAGCCuCUuGGCU- -5'
16223 3' -54.4 NC_004065.1 + 140353 0.66 0.981794
Target:  5'- uCUGCUGCgagcuCGUCUCCaUUGGGGAuuCCGu -3'
miRNA:   3'- -GGCGAUG-----GUAGAGG-AGCCUCUu-GGCu -5'
16223 3' -54.4 NC_004065.1 + 31979 0.66 0.981794
Target:  5'- uCCGCaacuCCAUCcCCUUGGAaccGCCGGc -3'
miRNA:   3'- -GGCGau--GGUAGaGGAGCCUcu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 97146 0.66 0.979742
Target:  5'- aCUGCUGCugguCAUCcgaCUCGGAGGGgCGGg -3'
miRNA:   3'- -GGCGAUG----GUAGag-GAGCCUCUUgGCU- -5'
16223 3' -54.4 NC_004065.1 + 149145 0.67 0.975132
Target:  5'- -aGUcGCCugAUCUUCgUCGGGGGGCCGGa -3'
miRNA:   3'- ggCGaUGG--UAGAGG-AGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 17980 0.67 0.975132
Target:  5'- gCCGCgcgACC-UCUugggUgUCGGGGAGCUGGa -3'
miRNA:   3'- -GGCGa--UGGuAGA----GgAGCCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 43474 0.68 0.953007
Target:  5'- gCCGCaGCaCGUgUCCUCGGcgccGCCGAu -3'
miRNA:   3'- -GGCGaUG-GUAgAGGAGCCucu-UGGCU- -5'
16223 3' -54.4 NC_004065.1 + 39271 0.68 0.948606
Target:  5'- gCCGCcACCGUCcCCaUCagaaccggcgaauGGGGAGCCGGc -3'
miRNA:   3'- -GGCGaUGGUAGaGG-AG-------------CCUCUUGGCU- -5'
16223 3' -54.4 NC_004065.1 + 32281 0.69 0.940379
Target:  5'- cCCGCUGuCCgcguccucgGUCUCCUCGucGGAGcCCGAc -3'
miRNA:   3'- -GGCGAU-GG---------UAGAGGAGCc-UCUU-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.