Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16223 | 3' | -54.4 | NC_004065.1 | + | 93697 | 0.68 | 0.956781 |
Target: 5'- cCCgGCUACC--CUCCUCGGcucACCGGa -3' miRNA: 3'- -GG-CGAUGGuaGAGGAGCCucuUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 122054 | 0.66 | 0.987017 |
Target: 5'- uCCGCUGCCgGUCUcaacCCUUGuAGAugcacaggGCCGAu -3' miRNA: 3'- -GGCGAUGG-UAGA----GGAGCcUCU--------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 146274 | 0.66 | 0.987017 |
Target: 5'- uCCGCgcgaguuccugGCCuucGUCUUCUCGGAcGACCa- -3' miRNA: 3'- -GGCGa----------UGG---UAGAGGAGCCUcUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 162159 | 0.66 | 0.985424 |
Target: 5'- -aGgU-CCGUCagcCCUCGGAGGAUCGGa -3' miRNA: 3'- ggCgAuGGUAGa--GGAGCCUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 24429 | 0.66 | 0.987017 |
Target: 5'- gCUGCUGCCGaCguagaCCUCGGGaGGCUGGc -3' miRNA: 3'- -GGCGAUGGUaGa----GGAGCCUcUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 117906 | 0.66 | 0.983685 |
Target: 5'- cCCGCUGCagaaagagggaUAUCgCCUCGG-GAuCCGGu -3' miRNA: 3'- -GGCGAUG-----------GUAGaGGAGCCuCUuGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 140353 | 0.66 | 0.981794 |
Target: 5'- uCUGCUGCgagcuCGUCUCCaUUGGGGAuuCCGu -3' miRNA: 3'- -GGCGAUG-----GUAGAGG-AGCCUCUu-GGCu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 31979 | 0.66 | 0.981794 |
Target: 5'- uCCGCaacuCCAUCcCCUUGGAaccGCCGGc -3' miRNA: 3'- -GGCGau--GGUAGaGGAGCCUcu-UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 97146 | 0.66 | 0.979742 |
Target: 5'- aCUGCUGCugguCAUCcgaCUCGGAGGGgCGGg -3' miRNA: 3'- -GGCGAUG----GUAGag-GAGCCUCUUgGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 17980 | 0.67 | 0.975132 |
Target: 5'- gCCGCgcgACC-UCUugggUgUCGGGGAGCUGGa -3' miRNA: 3'- -GGCGa--UGGuAGA----GgAGCCUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 149145 | 0.67 | 0.975132 |
Target: 5'- -aGUcGCCugAUCUUCgUCGGGGGGCCGGa -3' miRNA: 3'- ggCGaUGG--UAGAGG-AGCCUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 89464 | 0.67 | 0.966847 |
Target: 5'- aCGCUGCUcugCggcgUCUUGGAGAuggGCCGAu -3' miRNA: 3'- gGCGAUGGua-Ga---GGAGCCUCU---UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 75697 | 0.67 | 0.966847 |
Target: 5'- gCCGCgcccCCAcCUCCUgcguaucuucgCGuGAGAACCGGg -3' miRNA: 3'- -GGCGau--GGUaGAGGA-----------GC-CUCUUGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 150504 | 0.68 | 0.960343 |
Target: 5'- cCCGCUcgGCCGUgCguaCCUCGGcgaugGGAACCa- -3' miRNA: 3'- -GGCGA--UGGUA-Ga--GGAGCC-----UCUUGGcu -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 108396 | 0.68 | 0.960343 |
Target: 5'- gCGCUcaacGCCA--UCCUCGGGGGcauccugcccuACCGGg -3' miRNA: 3'- gGCGA----UGGUagAGGAGCCUCU-----------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 185467 | 0.68 | 0.956781 |
Target: 5'- gCCGCUAgaGgacUUCCUCGGGGAgaugaggacACCGGg -3' miRNA: 3'- -GGCGAUggUa--GAGGAGCCUCU---------UGGCU- -5' |
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16223 | 3' | -54.4 | NC_004065.1 | + | 211700 | 1.11 | 0.005486 |
Target: 5'- gCCGCUACCAUCUCCUCGGAGAACCGAa -3' miRNA: 3'- -GGCGAUGGUAGAGGAGCCUCUUGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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