miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 5' -57 NC_004065.1 + 165659 0.66 0.937299
Target:  5'- cUCCGGCCGCgcccUGAgGAcGGUcGGUUUCu -3'
miRNA:   3'- cAGGUCGGCGa---GCUgCU-CCA-CUAGAG- -5'
16223 5' -57 NC_004065.1 + 98450 0.66 0.932504
Target:  5'- -aCCAGUCGgaCGACcuGGUGGUCg- -3'
miRNA:   3'- caGGUCGGCgaGCUGcuCCACUAGag -5'
16223 5' -57 NC_004065.1 + 127411 0.66 0.932504
Target:  5'- cUCCcaGGCCGUcaccgUCGACGAGGagcacAUCUCc -3'
miRNA:   3'- cAGG--UCGGCG-----AGCUGCUCCac---UAGAG- -5'
16223 5' -57 NC_004065.1 + 67682 0.66 0.927484
Target:  5'- -cCCGGUCcgaucgGCUCGAUGAGGgGGUCg- -3'
miRNA:   3'- caGGUCGG------CGAGCUGCUCCaCUAGag -5'
16223 5' -57 NC_004065.1 + 164220 0.66 0.927484
Target:  5'- -aCgAGCCGCaUGACGGcGGUGAagUCg -3'
miRNA:   3'- caGgUCGGCGaGCUGCU-CCACUagAG- -5'
16223 5' -57 NC_004065.1 + 187172 0.66 0.922239
Target:  5'- cGUCCcuCgCGCUCucCGAGG-GGUCUCg -3'
miRNA:   3'- -CAGGucG-GCGAGcuGCUCCaCUAGAG- -5'
16223 5' -57 NC_004065.1 + 134259 0.66 0.922239
Target:  5'- -aCCgAGCCGCacgUCGACGAGaucaauGUGGUCg- -3'
miRNA:   3'- caGG-UCGGCG---AGCUGCUC------CACUAGag -5'
16223 5' -57 NC_004065.1 + 211142 0.66 0.918984
Target:  5'- gGUCUGGCCGUUCGGgGGGGagcgggcgugccggGAUgUCg -3'
miRNA:   3'- -CAGGUCGGCGAGCUgCUCCa-------------CUAgAG- -5'
16223 5' -57 NC_004065.1 + 36176 0.66 0.91677
Target:  5'- -gUCAGCCGCUCG-CGGGGggGcgCg- -3'
miRNA:   3'- caGGUCGGCGAGCuGCUCCa-CuaGag -5'
16223 5' -57 NC_004065.1 + 84745 0.67 0.911077
Target:  5'- -cCCcGUCGuCUCGGCGAGGcucggacGGUCUCu -3'
miRNA:   3'- caGGuCGGC-GAGCUGCUCCa------CUAGAG- -5'
16223 5' -57 NC_004065.1 + 106571 0.67 0.899026
Target:  5'- -gCgGGUCGCUgGGCGAcGUGAUCUa -3'
miRNA:   3'- caGgUCGGCGAgCUGCUcCACUAGAg -5'
16223 5' -57 NC_004065.1 + 66823 0.67 0.879326
Target:  5'- cUCCGGuCCG-UCGucCGAGGUGAUgUCc -3'
miRNA:   3'- cAGGUC-GGCgAGCu-GCUCCACUAgAG- -5'
16223 5' -57 NC_004065.1 + 137863 0.67 0.879326
Target:  5'- cGUCgAucGCCGCcgacagCGuCGGGGUGAUCUUc -3'
miRNA:   3'- -CAGgU--CGGCGa-----GCuGCUCCACUAGAG- -5'
16223 5' -57 NC_004065.1 + 107109 0.67 0.879326
Target:  5'- uGUCgCGGCUGaUCGGCGcGGUGAUCc- -3'
miRNA:   3'- -CAG-GUCGGCgAGCUGCuCCACUAGag -5'
16223 5' -57 NC_004065.1 + 116886 0.68 0.872341
Target:  5'- -cCCA-CCGCaugCGGCGguGGGUGAUCUUa -3'
miRNA:   3'- caGGUcGGCGa--GCUGC--UCCACUAGAG- -5'
16223 5' -57 NC_004065.1 + 32826 0.68 0.865152
Target:  5'- cGUCgGGCCGCUCGucCGAgaaGGUGAg--- -3'
miRNA:   3'- -CAGgUCGGCGAGCu-GCU---CCACUagag -5'
16223 5' -57 NC_004065.1 + 125916 0.68 0.864423
Target:  5'- -cCCGGCCGCUCGGCacgugcaggccGAccggaaaguagaaGGUGAgCUCg -3'
miRNA:   3'- caGGUCGGCGAGCUG-----------CU-------------CCACUaGAG- -5'
16223 5' -57 NC_004065.1 + 25483 0.68 0.85019
Target:  5'- cUCCcGCCGCcCGACGAGGc-GUCUg -3'
miRNA:   3'- cAGGuCGGCGaGCUGCUCCacUAGAg -5'
16223 5' -57 NC_004065.1 + 161957 0.68 0.842427
Target:  5'- cGUCgAGugaCCGCUcgCGACGA-GUGAUCUCu -3'
miRNA:   3'- -CAGgUC---GGCGA--GCUGCUcCACUAGAG- -5'
16223 5' -57 NC_004065.1 + 157335 0.68 0.834485
Target:  5'- aGUCCGGgUCGCUCGGC-AGGU--UCUCc -3'
miRNA:   3'- -CAGGUC-GGCGAGCUGcUCCAcuAGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.