Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 120515 | 0.68 | 0.834485 |
|
Target: 5'- cUCUuggcGCCGCUCGACGAuGUcgagGGUCUCc -3' miRNA: 3'- cAGGu---CGGCGAGCUGCUcCA----CUAGAG- -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 96782 | 0.69 | 0.826369 |
|
Target: 5'- aUCgCGGCCGUcuUCGACGAcucuuggacGUGGUCUCg -3' miRNA: 3'- cAG-GUCGGCG--AGCUGCUc--------CACUAGAG- -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 100145 | 0.7 | 0.78345 |
|
Target: 5'- cUCCAGCCGaugagcaUCGACGcAGGcgUGAUCa- -3' miRNA: 3'- cAGGUCGGCg------AGCUGC-UCC--ACUAGag -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 91048 | 0.7 | 0.765332 |
|
Target: 5'- -aCCGGCC--UCGAUGAGGcgacUGGUCUCg -3' miRNA: 3'- caGGUCGGcgAGCUGCUCC----ACUAGAG- -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 112226 | 0.71 | 0.698859 |
|
Target: 5'- -aCC-GCCGUcCGACGGGGUGAccgaugaugUCUCg -3' miRNA: 3'- caGGuCGGCGaGCUGCUCCACU---------AGAG- -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 152932 | 0.72 | 0.649627 |
|
Target: 5'- -gCC-GCCGCggcaaaUCGACGAGGaGAUCUCc -3' miRNA: 3'- caGGuCGGCG------AGCUGCUCCaCUAGAG- -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 19199 | 0.74 | 0.512719 |
|
Target: 5'- cUCCGGCCGCUCugcGCGAgccGGUGGUCg- -3' miRNA: 3'- cAGGUCGGCGAGc--UGCU---CCACUAGag -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 163652 | 0.75 | 0.466455 |
|
Target: 5'- --gCAGCCGCUCGACGAucagcggccGGUGuugCUCa -3' miRNA: 3'- cagGUCGGCGAGCUGCU---------CCACua-GAG- -5' |
|||||||
| 16223 | 5' | -57 | NC_004065.1 | + | 211735 | 1.1 | 0.003006 |
|
Target: 5'- cGUCCAGCCGCUCGACGAGGUGAUCUCg -3' miRNA: 3'- -CAGGUCGGCGAGCUGCUCCACUAGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home