miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16223 5' -57 NC_004065.1 + 211735 1.1 0.003006
Target:  5'- cGUCCAGCCGCUCGACGAGGUGAUCUCg -3'
miRNA:   3'- -CAGGUCGGCGAGCUGCUCCACUAGAG- -5'
16223 5' -57 NC_004065.1 + 163652 0.75 0.466455
Target:  5'- --gCAGCCGCUCGACGAucagcggccGGUGuugCUCa -3'
miRNA:   3'- cagGUCGGCGAGCUGCU---------CCACua-GAG- -5'
16223 5' -57 NC_004065.1 + 19199 0.74 0.512719
Target:  5'- cUCCGGCCGCUCugcGCGAgccGGUGGUCg- -3'
miRNA:   3'- cAGGUCGGCGAGc--UGCU---CCACUAGag -5'
16223 5' -57 NC_004065.1 + 152932 0.72 0.649627
Target:  5'- -gCC-GCCGCggcaaaUCGACGAGGaGAUCUCc -3'
miRNA:   3'- caGGuCGGCG------AGCUGCUCCaCUAGAG- -5'
16223 5' -57 NC_004065.1 + 112226 0.71 0.698859
Target:  5'- -aCC-GCCGUcCGACGGGGUGAccgaugaugUCUCg -3'
miRNA:   3'- caGGuCGGCGaGCUGCUCCACU---------AGAG- -5'
16223 5' -57 NC_004065.1 + 91048 0.7 0.765332
Target:  5'- -aCCGGCC--UCGAUGAGGcgacUGGUCUCg -3'
miRNA:   3'- caGGUCGGcgAGCUGCUCC----ACUAGAG- -5'
16223 5' -57 NC_004065.1 + 100145 0.7 0.78345
Target:  5'- cUCCAGCCGaugagcaUCGACGcAGGcgUGAUCa- -3'
miRNA:   3'- cAGGUCGGCg------AGCUGC-UCC--ACUAGag -5'
16223 5' -57 NC_004065.1 + 96782 0.69 0.826369
Target:  5'- aUCgCGGCCGUcuUCGACGAcucuuggacGUGGUCUCg -3'
miRNA:   3'- cAG-GUCGGCG--AGCUGCUc--------CACUAGAG- -5'
16223 5' -57 NC_004065.1 + 157335 0.68 0.834485
Target:  5'- aGUCCGGgUCGCUCGGC-AGGU--UCUCc -3'
miRNA:   3'- -CAGGUC-GGCGAGCUGcUCCAcuAGAG- -5'
16223 5' -57 NC_004065.1 + 120515 0.68 0.834485
Target:  5'- cUCUuggcGCCGCUCGACGAuGUcgagGGUCUCc -3'
miRNA:   3'- cAGGu---CGGCGAGCUGCUcCA----CUAGAG- -5'
16223 5' -57 NC_004065.1 + 161957 0.68 0.842427
Target:  5'- cGUCgAGugaCCGCUcgCGACGA-GUGAUCUCu -3'
miRNA:   3'- -CAGgUC---GGCGA--GCUGCUcCACUAGAG- -5'
16223 5' -57 NC_004065.1 + 25483 0.68 0.85019
Target:  5'- cUCCcGCCGCcCGACGAGGc-GUCUg -3'
miRNA:   3'- cAGGuCGGCGaGCUGCUCCacUAGAg -5'
16223 5' -57 NC_004065.1 + 125916 0.68 0.864423
Target:  5'- -cCCGGCCGCUCGGCacgugcaggccGAccggaaaguagaaGGUGAgCUCg -3'
miRNA:   3'- caGGUCGGCGAGCUG-----------CU-------------CCACUaGAG- -5'
16223 5' -57 NC_004065.1 + 32826 0.68 0.865152
Target:  5'- cGUCgGGCCGCUCGucCGAgaaGGUGAg--- -3'
miRNA:   3'- -CAGgUCGGCGAGCu-GCU---CCACUagag -5'
16223 5' -57 NC_004065.1 + 116886 0.68 0.872341
Target:  5'- -cCCA-CCGCaugCGGCGguGGGUGAUCUUa -3'
miRNA:   3'- caGGUcGGCGa--GCUGC--UCCACUAGAG- -5'
16223 5' -57 NC_004065.1 + 137863 0.67 0.879326
Target:  5'- cGUCgAucGCCGCcgacagCGuCGGGGUGAUCUUc -3'
miRNA:   3'- -CAGgU--CGGCGa-----GCuGCUCCACUAGAG- -5'
16223 5' -57 NC_004065.1 + 66823 0.67 0.879326
Target:  5'- cUCCGGuCCG-UCGucCGAGGUGAUgUCc -3'
miRNA:   3'- cAGGUC-GGCgAGCu-GCUCCACUAgAG- -5'
16223 5' -57 NC_004065.1 + 107109 0.67 0.879326
Target:  5'- uGUCgCGGCUGaUCGGCGcGGUGAUCc- -3'
miRNA:   3'- -CAG-GUCGGCgAGCUGCuCCACUAGag -5'
16223 5' -57 NC_004065.1 + 106571 0.67 0.899026
Target:  5'- -gCgGGUCGCUgGGCGAcGUGAUCUa -3'
miRNA:   3'- caGgUCGGCGAgCUGCUcCACUAGAg -5'
16223 5' -57 NC_004065.1 + 84745 0.67 0.911077
Target:  5'- -cCCcGUCGuCUCGGCGAGGcucggacGGUCUCu -3'
miRNA:   3'- caGGuCGGC-GAGCUGCUCCa------CUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.