Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16223 | 5' | -57 | NC_004065.1 | + | 152932 | 0.72 | 0.649627 |
Target: 5'- -gCC-GCCGCggcaaaUCGACGAGGaGAUCUCc -3' miRNA: 3'- caGGuCGGCG------AGCUGCUCCaCUAGAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 157335 | 0.68 | 0.834485 |
Target: 5'- aGUCCGGgUCGCUCGGC-AGGU--UCUCc -3' miRNA: 3'- -CAGGUC-GGCGAGCUGcUCCAcuAGAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 161957 | 0.68 | 0.842427 |
Target: 5'- cGUCgAGugaCCGCUcgCGACGA-GUGAUCUCu -3' miRNA: 3'- -CAGgUC---GGCGA--GCUGCUcCACUAGAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 163652 | 0.75 | 0.466455 |
Target: 5'- --gCAGCCGCUCGACGAucagcggccGGUGuugCUCa -3' miRNA: 3'- cagGUCGGCGAGCUGCU---------CCACua-GAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 164220 | 0.66 | 0.927484 |
Target: 5'- -aCgAGCCGCaUGACGGcGGUGAagUCg -3' miRNA: 3'- caGgUCGGCGaGCUGCU-CCACUagAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 165659 | 0.66 | 0.937299 |
Target: 5'- cUCCGGCCGCgcccUGAgGAcGGUcGGUUUCu -3' miRNA: 3'- cAGGUCGGCGa---GCUgCU-CCA-CUAGAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 187172 | 0.66 | 0.922239 |
Target: 5'- cGUCCcuCgCGCUCucCGAGG-GGUCUCg -3' miRNA: 3'- -CAGGucG-GCGAGcuGCUCCaCUAGAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 211142 | 0.66 | 0.918984 |
Target: 5'- gGUCUGGCCGUUCGGgGGGGagcgggcgugccggGAUgUCg -3' miRNA: 3'- -CAGGUCGGCGAGCUgCUCCa-------------CUAgAG- -5' |
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16223 | 5' | -57 | NC_004065.1 | + | 211735 | 1.1 | 0.003006 |
Target: 5'- cGUCCAGCCGCUCGACGAGGUGAUCUCg -3' miRNA: 3'- -CAGGUCGGCGAGCUGCUCCACUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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