miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16224 3' -53.6 NC_004065.1 + 90844 0.66 0.991466
Target:  5'- aGUCCuUGaUGAUgaUCGGGCUGUAgGAc -3'
miRNA:   3'- gCAGG-ACaAUUGa-AGCCCGGCGUgCU- -5'
16224 3' -53.6 NC_004065.1 + 29550 0.66 0.991466
Target:  5'- aGgCCUGUcGGCaUCaGGCCGCGCu- -3'
miRNA:   3'- gCaGGACAaUUGaAGcCCGGCGUGcu -5'
16224 3' -53.6 NC_004065.1 + 114862 0.66 0.990296
Target:  5'- -aUCCUGgcGACgaCGGuGCCGC-CGGc -3'
miRNA:   3'- gcAGGACaaUUGaaGCC-CGGCGuGCU- -5'
16224 3' -53.6 NC_004065.1 + 109587 0.66 0.989004
Target:  5'- -cUCCUGgcGGCguaUCaGGCCGCGCu- -3'
miRNA:   3'- gcAGGACaaUUGa--AGcCCGGCGUGcu -5'
16224 3' -53.6 NC_004065.1 + 471 0.66 0.989004
Target:  5'- uCG-CCUGagucAGCcucCGGGCCGCGCGc -3'
miRNA:   3'- -GCaGGACaa--UUGaa-GCCCGGCGUGCu -5'
16224 3' -53.6 NC_004065.1 + 119234 0.66 0.987582
Target:  5'- aGUaugagaCUGUgcGCUccgaaaCGGGCCGCGCGc -3'
miRNA:   3'- gCAg-----GACAauUGAa-----GCCCGGCGUGCu -5'
16224 3' -53.6 NC_004065.1 + 182449 0.66 0.984492
Target:  5'- gGUCCUGgUGACguagccucugggccUGGGUCGCugGGu -3'
miRNA:   3'- gCAGGACaAUUGaa------------GCCCGGCGugCU- -5'
16224 3' -53.6 NC_004065.1 + 119734 0.66 0.984315
Target:  5'- --aCCg--UGACggcCGGGUCGCGCGAg -3'
miRNA:   3'- gcaGGacaAUUGaa-GCCCGGCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 208065 0.67 0.973329
Target:  5'- cCGUCCUGccGACgaCGgcccuGGCCGCGCa- -3'
miRNA:   3'- -GCAGGACaaUUGaaGC-----CCGGCGUGcu -5'
16224 3' -53.6 NC_004065.1 + 105609 0.68 0.967656
Target:  5'- aCGUCCUGU--ACaaCGGGUucUGCAUGAc -3'
miRNA:   3'- -GCAGGACAauUGaaGCCCG--GCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 201196 0.68 0.967656
Target:  5'- gCGUCCc---GGC-UCGGGCgGCGCGGc -3'
miRNA:   3'- -GCAGGacaaUUGaAGCCCGgCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 15900 0.68 0.957622
Target:  5'- gCGUCCUuUUAuugUCGgcgcgugcgaccGGCCGCACGAg -3'
miRNA:   3'- -GCAGGAcAAUugaAGC------------CCGGCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 67552 0.69 0.931634
Target:  5'- uCGUCCUGg------CcGGCCGCGCGAg -3'
miRNA:   3'- -GCAGGACaauugaaGcCCGGCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 169108 0.7 0.909731
Target:  5'- aCGUCCUGacaGACg-CGGGCCGCGg-- -3'
miRNA:   3'- -GCAGGACaa-UUGaaGCCCGGCGUgcu -5'
16224 3' -53.6 NC_004065.1 + 67559 0.71 0.89091
Target:  5'- gGUCCUGguguACUUCacgcgcuGCCGCACGAc -3'
miRNA:   3'- gCAGGACaau-UGAAGcc-----CGGCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 18031 0.72 0.855214
Target:  5'- gGUCUgGUUcg--UCGGGCUGCGCGAg -3'
miRNA:   3'- gCAGGaCAAuugaAGCCCGGCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 41034 0.72 0.820605
Target:  5'- aGUCCgucgaagccgcagAGC-UCGGGCCGCGCGGc -3'
miRNA:   3'- gCAGGacaa---------UUGaAGCCCGGCGUGCU- -5'
16224 3' -53.6 NC_004065.1 + 32813 0.75 0.693152
Target:  5'- uCGUCCUcgUAGCcgUCGGGCCGCucgucCGAg -3'
miRNA:   3'- -GCAGGAcaAUUGa-AGCCCGGCGu----GCU- -5'
16224 3' -53.6 NC_004065.1 + 212496 1.09 0.007904
Target:  5'- cCGUCCUGUUAACUUCGGGCCGCACGAc -3'
miRNA:   3'- -GCAGGACAAUUGAAGCCCGGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.