miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16224 5' -60.2 NC_004065.1 + 203081 0.66 0.831468
Target:  5'- cGCCGCGgcCG-CCGGAGCggUCUCUUGAGc -3'
miRNA:   3'- uCGGCGU--GCgGGUCUUG--GGAGGACUC- -5'
16224 5' -60.2 NC_004065.1 + 207242 0.66 0.831468
Target:  5'- gAGCCGCACGguaCCCaccaucaagaAGAcgcAUCCUCCgGGGu -3'
miRNA:   3'- -UCGGCGUGC---GGG----------UCU---UGGGAGGaCUC- -5'
16224 5' -60.2 NC_004065.1 + 71971 0.66 0.831468
Target:  5'- gAGCCGgGCaGCCCGGAggcgacgcauGCCCUg--GAGg -3'
miRNA:   3'- -UCGGCgUG-CGGGUCU----------UGGGAggaCUC- -5'
16224 5' -60.2 NC_004065.1 + 27779 0.66 0.831468
Target:  5'- cGCCGC-CGUCUGGAgGgCCUCCUGc- -3'
miRNA:   3'- uCGGCGuGCGGGUCU-UgGGAGGACuc -5'
16224 5' -60.2 NC_004065.1 + 101568 0.66 0.831468
Target:  5'- uAGCCugauCGCGCCCGcGGACgCCUCCg--- -3'
miRNA:   3'- -UCGGc---GUGCGGGU-CUUG-GGAGGacuc -5'
16224 5' -60.2 NC_004065.1 + 81280 0.66 0.823439
Target:  5'- uGCUGUcCGUCgaAGAugACCUUCCUGAGg -3'
miRNA:   3'- uCGGCGuGCGGg-UCU--UGGGAGGACUC- -5'
16224 5' -60.2 NC_004065.1 + 137945 0.66 0.823439
Target:  5'- gAGCUGCugGCgCAacgcgcGGCCCUCC-GAGc -3'
miRNA:   3'- -UCGGCGugCGgGUc-----UUGGGAGGaCUC- -5'
16224 5' -60.2 NC_004065.1 + 135648 0.66 0.823439
Target:  5'- cGGCCGacaGCGaCCUAG-ACCCUCUgcgGAc -3'
miRNA:   3'- -UCGGCg--UGC-GGGUCuUGGGAGGa--CUc -5'
16224 5' -60.2 NC_004065.1 + 166991 0.66 0.823439
Target:  5'- cGCCuCGCGCgCCGGAcaGCUCUCCgUGGu -3'
miRNA:   3'- uCGGcGUGCG-GGUCU--UGGGAGG-ACUc -5'
16224 5' -60.2 NC_004065.1 + 63885 0.66 0.823439
Target:  5'- -cCCGCACGUcaCCcGAGCCCUcaaCCUGGa -3'
miRNA:   3'- ucGGCGUGCG--GGuCUUGGGA---GGACUc -5'
16224 5' -60.2 NC_004065.1 + 50351 0.66 0.823439
Target:  5'- cGCCGCGauCCC-GAGCCCccccgcugucaUCCUGAc -3'
miRNA:   3'- uCGGCGUgcGGGuCUUGGG-----------AGGACUc -5'
16224 5' -60.2 NC_004065.1 + 114201 0.66 0.823439
Target:  5'- aGGCgGC-CGCUCAGAGaCagCUCCUGAc -3'
miRNA:   3'- -UCGgCGuGCGGGUCUU-Gg-GAGGACUc -5'
16224 5' -60.2 NC_004065.1 + 75072 0.66 0.815252
Target:  5'- aGGCgGC-UGCUCAu-GCCgCUCCUGAGg -3'
miRNA:   3'- -UCGgCGuGCGGGUcuUGG-GAGGACUC- -5'
16224 5' -60.2 NC_004065.1 + 133017 0.66 0.815252
Target:  5'- aGGCgaucaGCACGUgCAGGAagguguaagCCUCCUGGGg -3'
miRNA:   3'- -UCGg----CGUGCGgGUCUUg--------GGAGGACUC- -5'
16224 5' -60.2 NC_004065.1 + 32511 0.66 0.815252
Target:  5'- -aCCGCGCGCggCCGGGuCCCUCg-GAGa -3'
miRNA:   3'- ucGGCGUGCG--GGUCUuGGGAGgaCUC- -5'
16224 5' -60.2 NC_004065.1 + 77734 0.66 0.814424
Target:  5'- cGCCGC-CGCCgCAGGACUgggcgagCUCCUcGAc -3'
miRNA:   3'- uCGGCGuGCGG-GUCUUGG-------GAGGA-CUc -5'
16224 5' -60.2 NC_004065.1 + 131272 0.66 0.806913
Target:  5'- -uCUGCGCGCCUucu-CCCUCCgGGGg -3'
miRNA:   3'- ucGGCGUGCGGGucuuGGGAGGaCUC- -5'
16224 5' -60.2 NC_004065.1 + 65904 0.66 0.806913
Target:  5'- uGCCGCgGCGCCUGGAACuguaCCgcaaCCUGGu -3'
miRNA:   3'- uCGGCG-UGCGGGUCUUG----GGa---GGACUc -5'
16224 5' -60.2 NC_004065.1 + 29128 0.66 0.798432
Target:  5'- aGGCCGguCGCCCAGcgcgacgggcAGCCgagcCCUGAa -3'
miRNA:   3'- -UCGGCguGCGGGUC----------UUGGga--GGACUc -5'
16224 5' -60.2 NC_004065.1 + 122740 0.66 0.797576
Target:  5'- uGGCCGUgcgucggGCGCCCAGGAUCa-UCUGGu -3'
miRNA:   3'- -UCGGCG-------UGCGGGUCUUGGgaGGACUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.