miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16224 5' -60.2 NC_004065.1 + 29128 0.66 0.798432
Target:  5'- aGGCCGguCGCCCAGcgcgacgggcAGCCgagcCCUGAa -3'
miRNA:   3'- -UCGGCguGCGGGUC----------UUGGga--GGACUc -5'
16224 5' -60.2 NC_004065.1 + 120196 0.67 0.754134
Target:  5'- cGCCGCGCucGCCCuGccGAUCUUCUUGGGc -3'
miRNA:   3'- uCGGCGUG--CGGGuC--UUGGGAGGACUC- -5'
16224 5' -60.2 NC_004065.1 + 191266 0.67 0.76322
Target:  5'- cAGCCucgucucgaaguGCAC-UUCGGGGCCCUCuCUGAGg -3'
miRNA:   3'- -UCGG------------CGUGcGGGUCUUGGGAG-GACUC- -5'
16224 5' -60.2 NC_004065.1 + 53699 0.67 0.7722
Target:  5'- uGUCGC-CGCCC-GAccGCCCUCCUc-- -3'
miRNA:   3'- uCGGCGuGCGGGuCU--UGGGAGGAcuc -5'
16224 5' -60.2 NC_004065.1 + 110191 0.67 0.7722
Target:  5'- cGGCCGCgACGCgCCGccGCCCgUCgaGAGg -3'
miRNA:   3'- -UCGGCG-UGCG-GGUcuUGGG-AGgaCUC- -5'
16224 5' -60.2 NC_004065.1 + 114234 0.67 0.780187
Target:  5'- cGGCCGCAguuuccgUGCCCGGGACCgCcaacCCUGc- -3'
miRNA:   3'- -UCGGCGU-------GCGGGUCUUGG-Ga---GGACuc -5'
16224 5' -60.2 NC_004065.1 + 58231 0.67 0.781068
Target:  5'- cGCCGCGCaCgaAGGGCuCCUCgCUGAGg -3'
miRNA:   3'- uCGGCGUGcGggUCUUG-GGAG-GACUC- -5'
16224 5' -60.2 NC_004065.1 + 147719 0.66 0.789814
Target:  5'- gAGCUGgACGCCgCGcuacGGGCCCUCaggGAGa -3'
miRNA:   3'- -UCGGCgUGCGG-GU----CUUGGGAGga-CUC- -5'
16224 5' -60.2 NC_004065.1 + 122740 0.66 0.797576
Target:  5'- uGGCCGUgcgucggGCGCCCAGGAUCa-UCUGGu -3'
miRNA:   3'- -UCGGCG-------UGCGGGUCUUGGgaGGACUc -5'
16224 5' -60.2 NC_004065.1 + 18299 0.67 0.754134
Target:  5'- aAGCCGaCACGagCCGGAcucGCCCUCUcGAu -3'
miRNA:   3'- -UCGGC-GUGCg-GGUCU---UGGGAGGaCUc -5'
16224 5' -60.2 NC_004065.1 + 199876 0.67 0.74495
Target:  5'- uGCCGCacagcacgaGCGgCCGGucGCCCUCCccgGGGg -3'
miRNA:   3'- uCGGCG---------UGCgGGUCu-UGGGAGGa--CUC- -5'
16224 5' -60.2 NC_004065.1 + 45553 0.68 0.726322
Target:  5'- cGGCgGCAgcCGCCCAGAAacaUUCUGAGu -3'
miRNA:   3'- -UCGgCGU--GCGGGUCUUgggAGGACUC- -5'
16224 5' -60.2 NC_004065.1 + 97040 0.71 0.514978
Target:  5'- uGCUGCGCGUgC-GAGCUCUCCUGGu -3'
miRNA:   3'- uCGGCGUGCGgGuCUUGGGAGGACUc -5'
16224 5' -60.2 NC_004065.1 + 207648 0.71 0.533699
Target:  5'- uGCCGCACGCggCCGGcuCCCUCuCUGu- -3'
miRNA:   3'- uCGGCGUGCG--GGUCuuGGGAG-GACuc -5'
16224 5' -60.2 NC_004065.1 + 97706 0.71 0.552656
Target:  5'- cGCCGC-CGCCCGG-GCUgUCCagGAGg -3'
miRNA:   3'- uCGGCGuGCGGGUCuUGGgAGGa-CUC- -5'
16224 5' -60.2 NC_004065.1 + 100147 0.69 0.668923
Target:  5'- cGCCGCAgCGCgCGgcacaggucGAACaCCUCCUGAc -3'
miRNA:   3'- uCGGCGU-GCGgGU---------CUUG-GGAGGACUc -5'
16224 5' -60.2 NC_004065.1 + 176416 0.68 0.688246
Target:  5'- aGGgCGcCGCGCCCGGuGCCaUUCUGGGg -3'
miRNA:   3'- -UCgGC-GUGCGGGUCuUGGgAGGACUC- -5'
16224 5' -60.2 NC_004065.1 + 144358 0.68 0.688246
Target:  5'- cGCCGCagACGCCCAGuAUCgUCCcGAu -3'
miRNA:   3'- uCGGCG--UGCGGGUCuUGGgAGGaCUc -5'
16224 5' -60.2 NC_004065.1 + 134231 0.68 0.716893
Target:  5'- gGGCUGCgugaGCGCCCuGGAACCCgucaCC-GAGc -3'
miRNA:   3'- -UCGGCG----UGCGGG-UCUUGGGa---GGaCUC- -5'
16224 5' -60.2 NC_004065.1 + 76045 0.68 0.720673
Target:  5'- gGGCuuCGUugACGCUCAGGaaguuaaaaucgcagACCCUCUUGAGg -3'
miRNA:   3'- -UCG--GCG--UGCGGGUCU---------------UGGGAGGACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.