miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 3' -50.4 NC_004065.1 + 156744 0.66 0.999028
Target:  5'- uAGACagGGCUCGGAaCGGguggaucugGAACGUCu-- -3'
miRNA:   3'- -UCUG--UCGAGUCU-GCCa--------CUUGUAGuag -5'
16226 3' -50.4 NC_004065.1 + 98137 0.66 0.999028
Target:  5'- cAGGCGGC---GGCGGUGcGCAUCGc- -3'
miRNA:   3'- -UCUGUCGaguCUGCCACuUGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 9413 0.66 0.999028
Target:  5'- cGGACGGCaUAGugcaagauACGGUGGAgAUCAg- -3'
miRNA:   3'- -UCUGUCGaGUC--------UGCCACUUgUAGUag -5'
16226 3' -50.4 NC_004065.1 + 206526 0.66 0.999028
Target:  5'- cAGACGGCgauagcgCGGACGcGaaucgGAcucgGCGUCGUCa -3'
miRNA:   3'- -UCUGUCGa------GUCUGC-Ca----CU----UGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 44843 0.66 0.999028
Target:  5'- cGGACAGCgac-ACGGgccgGAGCAgCGUCg -3'
miRNA:   3'- -UCUGUCGagucUGCCa---CUUGUaGUAG- -5'
16226 3' -50.4 NC_004065.1 + 144757 0.66 0.998969
Target:  5'- cGACAgGCUCAGcaggaagaucugaaaGGUGucCAUCGUCa -3'
miRNA:   3'- uCUGU-CGAGUCug-------------CCACuuGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 8533 0.66 0.99882
Target:  5'- cGAcCGGCUCGaACGGUGGAUcgCGg- -3'
miRNA:   3'- uCU-GUCGAGUcUGCCACUUGuaGUag -5'
16226 3' -50.4 NC_004065.1 + 66785 0.66 0.99882
Target:  5'- cAGACGauGCUCccGCGGUgGAACAUguUCa -3'
miRNA:   3'- -UCUGU--CGAGucUGCCA-CUUGUAguAG- -5'
16226 3' -50.4 NC_004065.1 + 81895 0.66 0.99882
Target:  5'- cGGGCGuGCUgAGGuCGGcgUGGACGUCGUa -3'
miRNA:   3'- -UCUGU-CGAgUCU-GCC--ACUUGUAGUAg -5'
16226 3' -50.4 NC_004065.1 + 18957 0.66 0.99882
Target:  5'- uGGACGGCgcauauucgaGGAUgagcgGGUGGACAUCuGUCa -3'
miRNA:   3'- -UCUGUCGag--------UCUG-----CCACUUGUAG-UAG- -5'
16226 3' -50.4 NC_004065.1 + 191553 0.66 0.998627
Target:  5'- aGGGCGGCUCAcucuuccgcacgcguGCGGUGAucggcgcgcgaaaacCGUCGUCg -3'
miRNA:   3'- -UCUGUCGAGUc--------------UGCCACUu--------------GUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 146100 0.66 0.998575
Target:  5'- aGGACAuGCggaucuuccaGGACGG-GAAgGUCGUCa -3'
miRNA:   3'- -UCUGU-CGag--------UCUGCCaCUUgUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 229658 0.66 0.998575
Target:  5'- cGGCGGCaguGGCaGGUGGGCGUCGg- -3'
miRNA:   3'- uCUGUCGaguCUG-CCACUUGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 42624 0.66 0.998257
Target:  5'- -aACAGCUCgcacguguccgagAGACGGUGGACcgUggAUCc -3'
miRNA:   3'- ucUGUCGAG-------------UCUGCCACUUGuaG--UAG- -5'
16226 3' -50.4 NC_004065.1 + 72116 0.66 0.997954
Target:  5'- uGGACAGga-GGACGGUGGACG-CGg- -3'
miRNA:   3'- -UCUGUCgagUCUGCCACUUGUaGUag -5'
16226 3' -50.4 NC_004065.1 + 122779 0.66 0.997954
Target:  5'- cGACGcGCcgCAuGAUGGUGAGaGUCAUCu -3'
miRNA:   3'- uCUGU-CGa-GU-CUGCCACUUgUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 194665 0.67 0.997567
Target:  5'- uGGCAGCUCcuucGACgaGGUGAAgGcuuUCGUCa -3'
miRNA:   3'- uCUGUCGAGu---CUG--CCACUUgU---AGUAG- -5'
16226 3' -50.4 NC_004065.1 + 202423 0.67 0.997121
Target:  5'- aGGAcCGGCUCAGAUagcgcgucuagGGUGuACGgcggCAUCg -3'
miRNA:   3'- -UCU-GUCGAGUCUG-----------CCACuUGUa---GUAG- -5'
16226 3' -50.4 NC_004065.1 + 126555 0.67 0.996609
Target:  5'- cGACAuccGCgcgCAGAUcGUGAACAUCAgcUCg -3'
miRNA:   3'- uCUGU---CGa--GUCUGcCACUUGUAGU--AG- -5'
16226 3' -50.4 NC_004065.1 + 165961 0.67 0.996609
Target:  5'- gAGuCuGCUCcaACGGUGGACGUCGcUCu -3'
miRNA:   3'- -UCuGuCGAGucUGCCACUUGUAGU-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.