Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 110969 | 0.7 | 0.972985 |
Target: 5'- -uGCAGCUgaGGACGGgucaGAGCGUCGUg -3' miRNA: 3'- ucUGUCGAg-UCUGCCa---CUUGUAGUAg -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 43077 | 0.71 | 0.967029 |
Target: 5'- cAGACcgcacGUUCGGACGGUccGGGCAUCcgCg -3' miRNA: 3'- -UCUGu----CGAGUCUGCCA--CUUGUAGuaG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 80401 | 0.72 | 0.939035 |
Target: 5'- cGACGGCgccgguGACGGUGGACgacaaccggGUCGUCu -3' miRNA: 3'- uCUGUCGagu---CUGCCACUUG---------UAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 44471 | 0.72 | 0.939035 |
Target: 5'- cGGugGGCaCAG-UGGUGAACAUgAUCa -3' miRNA: 3'- -UCugUCGaGUCuGCCACUUGUAgUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 117139 | 0.73 | 0.905534 |
Target: 5'- gGGAUcGCUCAgGACGGUGAACggCAc- -3' miRNA: 3'- -UCUGuCGAGU-CUGCCACUUGuaGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 107160 | 0.74 | 0.8924 |
Target: 5'- uGGGCAGCUCgcaGGugGGgcUGGACgcgGUCGUCa -3' miRNA: 3'- -UCUGUCGAG---UCugCC--ACUUG---UAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 136487 | 0.75 | 0.839222 |
Target: 5'- cGGCGGCUCcGGCGGUcugGAccccaGCGUCAUCu -3' miRNA: 3'- uCUGUCGAGuCUGCCA---CU-----UGUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 28066 | 0.75 | 0.822164 |
Target: 5'- cGGAUAGgUCugcuGACGGUGGAguUCAUCu -3' miRNA: 3'- -UCUGUCgAGu---CUGCCACUUguAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 144989 | 0.76 | 0.776528 |
Target: 5'- -uGCGGCgUCAGAUGGUGGaucgcguuguACAUCGUCa -3' miRNA: 3'- ucUGUCG-AGUCUGCCACU----------UGUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 166469 | 0.8 | 0.603477 |
Target: 5'- cGGACAGCaCGGGCGGUGAcACGUCGa- -3' miRNA: 3'- -UCUGUCGaGUCUGCCACU-UGUAGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 218150 | 1.09 | 0.013398 |
Target: 5'- uAGACAGCUCAGACGGUGAACAUCAUCc -3' miRNA: 3'- -UCUGUCGAGUCUGCCACUUGUAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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