Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 139018 | 0.69 | 0.982498 |
Target: 5'- aGGACAcGCagCAGACGGUGAAacUCAc- -3' miRNA: 3'- -UCUGU-CGa-GUCUGCCACUUguAGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 177913 | 0.68 | 0.99174 |
Target: 5'- cGACGGUUCAG-CGGUcuACGUCgGUCu -3' miRNA: 3'- uCUGUCGAGUCuGCCAcuUGUAG-UAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 139099 | 0.68 | 0.992805 |
Target: 5'- gGGAcCAGCUCAuGACGGUcGACGcgGUCu -3' miRNA: 3'- -UCU-GUCGAGU-CUGCCAcUUGUagUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 157116 | 0.68 | 0.992805 |
Target: 5'- gGGGC-GCcuUCAG-CGG-GGGCAUCAUCg -3' miRNA: 3'- -UCUGuCG--AGUCuGCCaCUUGUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 162435 | 0.68 | 0.993757 |
Target: 5'- -aGCAGCUCcGACGGcGAgaucaGCGUCGUg -3' miRNA: 3'- ucUGUCGAGuCUGCCaCU-----UGUAGUAg -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 176332 | 0.68 | 0.994606 |
Target: 5'- aGGGCGG-UCGGGCGGcGAcACgAUCAUCg -3' miRNA: 3'- -UCUGUCgAGUCUGCCaCU-UG-UAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 143820 | 0.68 | 0.992497 |
Target: 5'- -uACAGCUCggggcgaacaagggAGGCGGaaagcGGACGUCGUCu -3' miRNA: 3'- ucUGUCGAG--------------UCUGCCa----CUUGUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 68295 | 0.68 | 0.992497 |
Target: 5'- aGGAgGGCUCggcgacggacuucgAGACGGUGu-CGUCGUg -3' miRNA: 3'- -UCUgUCGAG--------------UCUGCCACuuGUAGUAg -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 37507 | 0.68 | 0.994606 |
Target: 5'- uGGCGGCUCuccgccaaGCGGUGGACcUCAg- -3' miRNA: 3'- uCUGUCGAGuc------UGCCACUUGuAGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 78929 | 0.68 | 0.994606 |
Target: 5'- cGACGGCgUCGGACagcauGGUG-GCGuUCAUCa -3' miRNA: 3'- uCUGUCG-AGUCUG-----CCACuUGU-AGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 207312 | 0.68 | 0.99174 |
Target: 5'- cAGACGGUUUcgGGACGGUGGACc----- -3' miRNA: 3'- -UCUGUCGAG--UCUGCCACUUGuaguag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 126555 | 0.67 | 0.996609 |
Target: 5'- cGACAuccGCgcgCAGAUcGUGAACAUCAgcUCg -3' miRNA: 3'- uCUGU---CGa--GUCUGcCACUUGUAGU--AG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 165961 | 0.67 | 0.996609 |
Target: 5'- gAGuCuGCUCcaACGGUGGACGUCGcUCu -3' miRNA: 3'- -UCuGuCGAGucUGCCACUUGUAGU-AG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 202423 | 0.67 | 0.997121 |
Target: 5'- aGGAcCGGCUCAGAUagcgcgucuagGGUGuACGgcggCAUCg -3' miRNA: 3'- -UCU-GUCGAGUCUG-----------CCACuUGUa---GUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 194665 | 0.67 | 0.997567 |
Target: 5'- uGGCAGCUCcuucGACgaGGUGAAgGcuuUCGUCa -3' miRNA: 3'- uCUGUCGAGu---CUG--CCACUUgU---AGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 9413 | 0.66 | 0.999028 |
Target: 5'- cGGACGGCaUAGugcaagauACGGUGGAgAUCAg- -3' miRNA: 3'- -UCUGUCGaGUC--------UGCCACUUgUAGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 191553 | 0.66 | 0.998627 |
Target: 5'- aGGGCGGCUCAcucuuccgcacgcguGCGGUGAucggcgcgcgaaaacCGUCGUCg -3' miRNA: 3'- -UCUGUCGAGUc--------------UGCCACUu--------------GUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 81895 | 0.66 | 0.99882 |
Target: 5'- cGGGCGuGCUgAGGuCGGcgUGGACGUCGUa -3' miRNA: 3'- -UCUGU-CGAgUCU-GCC--ACUUGUAGUAg -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 144757 | 0.66 | 0.998969 |
Target: 5'- cGACAgGCUCAGcaggaagaucugaaaGGUGucCAUCGUCa -3' miRNA: 3'- uCUGU-CGAGUCug-------------CCACuuGUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 44843 | 0.66 | 0.999028 |
Target: 5'- cGGACAGCgac-ACGGgccgGAGCAgCGUCg -3' miRNA: 3'- -UCUGUCGagucUGCCa---CUUGUaGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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