miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 3' -50.4 NC_004065.1 + 218150 1.09 0.013398
Target:  5'- uAGACAGCUCAGACGGUGAACAUCAUCc -3'
miRNA:   3'- -UCUGUCGAGUCUGCCACUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 166469 0.8 0.603477
Target:  5'- cGGACAGCaCGGGCGGUGAcACGUCGa- -3'
miRNA:   3'- -UCUGUCGaGUCUGCCACU-UGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 144989 0.76 0.776528
Target:  5'- -uGCGGCgUCAGAUGGUGGaucgcguuguACAUCGUCa -3'
miRNA:   3'- ucUGUCG-AGUCUGCCACU----------UGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 28066 0.75 0.822164
Target:  5'- cGGAUAGgUCugcuGACGGUGGAguUCAUCu -3'
miRNA:   3'- -UCUGUCgAGu---CUGCCACUUguAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 136487 0.75 0.839222
Target:  5'- cGGCGGCUCcGGCGGUcugGAccccaGCGUCAUCu -3'
miRNA:   3'- uCUGUCGAGuCUGCCA---CU-----UGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 107160 0.74 0.8924
Target:  5'- uGGGCAGCUCgcaGGugGGgcUGGACgcgGUCGUCa -3'
miRNA:   3'- -UCUGUCGAG---UCugCC--ACUUG---UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 117139 0.73 0.905534
Target:  5'- gGGAUcGCUCAgGACGGUGAACggCAc- -3'
miRNA:   3'- -UCUGuCGAGU-CUGCCACUUGuaGUag -5'
16226 3' -50.4 NC_004065.1 + 44471 0.72 0.939035
Target:  5'- cGGugGGCaCAG-UGGUGAACAUgAUCa -3'
miRNA:   3'- -UCugUCGaGUCuGCCACUUGUAgUAG- -5'
16226 3' -50.4 NC_004065.1 + 80401 0.72 0.939035
Target:  5'- cGACGGCgccgguGACGGUGGACgacaaccggGUCGUCu -3'
miRNA:   3'- uCUGUCGagu---CUGCCACUUG---------UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 43077 0.71 0.967029
Target:  5'- cAGACcgcacGUUCGGACGGUccGGGCAUCcgCg -3'
miRNA:   3'- -UCUGu----CGAGUCUGCCA--CUUGUAGuaG- -5'
16226 3' -50.4 NC_004065.1 + 35626 0.7 0.970113
Target:  5'- cGGCGGCggcGGCGG-GGAUGUCAUCg -3'
miRNA:   3'- uCUGUCGaguCUGCCaCUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 122669 0.7 0.970113
Target:  5'- cGGGCGGCagGG-UGGUGAGCA-CGUCu -3'
miRNA:   3'- -UCUGUCGagUCuGCCACUUGUaGUAG- -5'
16226 3' -50.4 NC_004065.1 + 110969 0.7 0.972985
Target:  5'- -uGCAGCUgaGGACGGgucaGAGCGUCGUg -3'
miRNA:   3'- ucUGUCGAg-UCUGCCa---CUUGUAGUAg -5'
16226 3' -50.4 NC_004065.1 + 69188 0.7 0.975395
Target:  5'- cGACggAGUUCGcacagucgcugucGACGGUGAACAUCccGUCg -3'
miRNA:   3'- uCUG--UCGAGU-------------CUGCCACUUGUAG--UAG- -5'
16226 3' -50.4 NC_004065.1 + 200867 0.7 0.975652
Target:  5'- cGGgGGCgCGGGCGGUGGcgaAUCGUCg -3'
miRNA:   3'- uCUgUCGaGUCUGCCACUug-UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 153623 0.7 0.978121
Target:  5'- cGGGCGGCgccacUCGGACGGcggcGAGC-UCAUCc -3'
miRNA:   3'- -UCUGUCG-----AGUCUGCCa---CUUGuAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 139018 0.69 0.982498
Target:  5'- aGGACAcGCagCAGACGGUGAAacUCAc- -3'
miRNA:   3'- -UCUGU-CGa-GUCUGCCACUUguAGUag -5'
16226 3' -50.4 NC_004065.1 + 106652 0.69 0.984422
Target:  5'- -cGCAGUUCuucacGACGGacGACAUCAUCa -3'
miRNA:   3'- ucUGUCGAGu----CUGCCacUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 96273 0.69 0.98618
Target:  5'- uGGACGGCg-GGGCGGccagGGGCGUCAc- -3'
miRNA:   3'- -UCUGUCGagUCUGCCa---CUUGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 61809 0.69 0.987783
Target:  5'- --cCAGCUCGGACGGc--GCuUCAUCg -3'
miRNA:   3'- ucuGUCGAGUCUGCCacuUGuAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.