Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 78929 | 0.68 | 0.994606 |
Target: 5'- cGACGGCgUCGGACagcauGGUG-GCGuUCAUCa -3' miRNA: 3'- uCUGUCG-AGUCUG-----CCACuUGU-AGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 37507 | 0.68 | 0.994606 |
Target: 5'- uGGCGGCUCuccgccaaGCGGUGGACcUCAg- -3' miRNA: 3'- uCUGUCGAGuc------UGCCACUUGuAGUag -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 176332 | 0.68 | 0.994606 |
Target: 5'- aGGGCGG-UCGGGCGGcGAcACgAUCAUCg -3' miRNA: 3'- -UCUGUCgAGUCUGCCaCU-UG-UAGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 162435 | 0.68 | 0.993757 |
Target: 5'- -aGCAGCUCcGACGGcGAgaucaGCGUCGUg -3' miRNA: 3'- ucUGUCGAGuCUGCCaCU-----UGUAGUAg -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 157116 | 0.68 | 0.992805 |
Target: 5'- gGGGC-GCcuUCAG-CGG-GGGCAUCAUCg -3' miRNA: 3'- -UCUGuCG--AGUCuGCCaCUUGUAGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 139099 | 0.68 | 0.992805 |
Target: 5'- gGGAcCAGCUCAuGACGGUcGACGcgGUCu -3' miRNA: 3'- -UCU-GUCGAGU-CUGCCAcUUGUagUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 68295 | 0.68 | 0.992497 |
Target: 5'- aGGAgGGCUCggcgacggacuucgAGACGGUGu-CGUCGUg -3' miRNA: 3'- -UCUgUCGAG--------------UCUGCCACuuGUAGUAg -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 143820 | 0.68 | 0.992497 |
Target: 5'- -uACAGCUCggggcgaacaagggAGGCGGaaagcGGACGUCGUCu -3' miRNA: 3'- ucUGUCGAG--------------UCUGCCa----CUUGUAGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 177913 | 0.68 | 0.99174 |
Target: 5'- cGACGGUUCAG-CGGUcuACGUCgGUCu -3' miRNA: 3'- uCUGUCGAGUCuGCCAcuUGUAG-UAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 207312 | 0.68 | 0.99174 |
Target: 5'- cAGACGGUUUcgGGACGGUGGACc----- -3' miRNA: 3'- -UCUGUCGAG--UCUGCCACUUGuaguag -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 24467 | 0.69 | 0.989237 |
Target: 5'- gGGGCAGCUCGGACa-UGGGCG-CGUa -3' miRNA: 3'- -UCUGUCGAGUCUGccACUUGUaGUAg -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 61809 | 0.69 | 0.987783 |
Target: 5'- --cCAGCUCGGACGGc--GCuUCAUCg -3' miRNA: 3'- ucuGUCGAGUCUGCCacuUGuAGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 96273 | 0.69 | 0.98618 |
Target: 5'- uGGACGGCg-GGGCGGccagGGGCGUCAc- -3' miRNA: 3'- -UCUGUCGagUCUGCCa---CUUGUAGUag -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 106652 | 0.69 | 0.984422 |
Target: 5'- -cGCAGUUCuucacGACGGacGACAUCAUCa -3' miRNA: 3'- ucUGUCGAGu----CUGCCacUUGUAGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 139018 | 0.69 | 0.982498 |
Target: 5'- aGGACAcGCagCAGACGGUGAAacUCAc- -3' miRNA: 3'- -UCUGU-CGa-GUCUGCCACUUguAGUag -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 153623 | 0.7 | 0.978121 |
Target: 5'- cGGGCGGCgccacUCGGACGGcggcGAGC-UCAUCc -3' miRNA: 3'- -UCUGUCG-----AGUCUGCCa---CUUGuAGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 200867 | 0.7 | 0.975652 |
Target: 5'- cGGgGGCgCGGGCGGUGGcgaAUCGUCg -3' miRNA: 3'- uCUgUCGaGUCUGCCACUug-UAGUAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 69188 | 0.7 | 0.975395 |
Target: 5'- cGACggAGUUCGcacagucgcugucGACGGUGAACAUCccGUCg -3' miRNA: 3'- uCUG--UCGAGU-------------CUGCCACUUGUAG--UAG- -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 110969 | 0.7 | 0.972985 |
Target: 5'- -uGCAGCUgaGGACGGgucaGAGCGUCGUg -3' miRNA: 3'- ucUGUCGAg-UCUGCCa---CUUGUAGUAg -5' |
|||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 35626 | 0.7 | 0.970113 |
Target: 5'- cGGCGGCggcGGCGG-GGAUGUCAUCg -3' miRNA: 3'- uCUGUCGaguCUGCCaCUUGUAGUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home