miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 3' -50.4 NC_004065.1 + 166469 0.8 0.603477
Target:  5'- cGGACAGCaCGGGCGGUGAcACGUCGa- -3'
miRNA:   3'- -UCUGUCGaGUCUGCCACU-UGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 176332 0.68 0.994606
Target:  5'- aGGGCGG-UCGGGCGGcGAcACgAUCAUCg -3'
miRNA:   3'- -UCUGUCgAGUCUGCCaCU-UG-UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 177913 0.68 0.99174
Target:  5'- cGACGGUUCAG-CGGUcuACGUCgGUCu -3'
miRNA:   3'- uCUGUCGAGUCuGCCAcuUGUAG-UAG- -5'
16226 3' -50.4 NC_004065.1 + 191553 0.66 0.998627
Target:  5'- aGGGCGGCUCAcucuuccgcacgcguGCGGUGAucggcgcgcgaaaacCGUCGUCg -3'
miRNA:   3'- -UCUGUCGAGUc--------------UGCCACUu--------------GUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 194665 0.67 0.997567
Target:  5'- uGGCAGCUCcuucGACgaGGUGAAgGcuuUCGUCa -3'
miRNA:   3'- uCUGUCGAGu---CUG--CCACUUgU---AGUAG- -5'
16226 3' -50.4 NC_004065.1 + 200867 0.7 0.975652
Target:  5'- cGGgGGCgCGGGCGGUGGcgaAUCGUCg -3'
miRNA:   3'- uCUgUCGaGUCUGCCACUug-UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 202423 0.67 0.997121
Target:  5'- aGGAcCGGCUCAGAUagcgcgucuagGGUGuACGgcggCAUCg -3'
miRNA:   3'- -UCU-GUCGAGUCUG-----------CCACuUGUa---GUAG- -5'
16226 3' -50.4 NC_004065.1 + 206526 0.66 0.999028
Target:  5'- cAGACGGCgauagcgCGGACGcGaaucgGAcucgGCGUCGUCa -3'
miRNA:   3'- -UCUGUCGa------GUCUGC-Ca----CU----UGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 207312 0.68 0.99174
Target:  5'- cAGACGGUUUcgGGACGGUGGACc----- -3'
miRNA:   3'- -UCUGUCGAG--UCUGCCACUUGuaguag -5'
16226 3' -50.4 NC_004065.1 + 218150 1.09 0.013398
Target:  5'- uAGACAGCUCAGACGGUGAACAUCAUCc -3'
miRNA:   3'- -UCUGUCGAGUCUGCCACUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 229658 0.66 0.998575
Target:  5'- cGGCGGCaguGGCaGGUGGGCGUCGg- -3'
miRNA:   3'- uCUGUCGaguCUG-CCACUUGUAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.