Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16226 | 3' | -50.4 | NC_004065.1 | + | 139099 | 0.68 | 0.992805 |
Target: 5'- gGGAcCAGCUCAuGACGGUcGACGcgGUCu -3' miRNA: 3'- -UCU-GUCGAGU-CUGCCAcUUGUagUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 139018 | 0.69 | 0.982498 |
Target: 5'- aGGACAcGCagCAGACGGUGAAacUCAc- -3' miRNA: 3'- -UCUGU-CGa-GUCUGCCACUUguAGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 136487 | 0.75 | 0.839222 |
Target: 5'- cGGCGGCUCcGGCGGUcugGAccccaGCGUCAUCu -3' miRNA: 3'- uCUGUCGAGuCUGCCA---CU-----UGUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 126555 | 0.67 | 0.996609 |
Target: 5'- cGACAuccGCgcgCAGAUcGUGAACAUCAgcUCg -3' miRNA: 3'- uCUGU---CGa--GUCUGcCACUUGUAGU--AG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 122779 | 0.66 | 0.997954 |
Target: 5'- cGACGcGCcgCAuGAUGGUGAGaGUCAUCu -3' miRNA: 3'- uCUGU-CGa-GU-CUGCCACUUgUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 122669 | 0.7 | 0.970113 |
Target: 5'- cGGGCGGCagGG-UGGUGAGCA-CGUCu -3' miRNA: 3'- -UCUGUCGagUCuGCCACUUGUaGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 117139 | 0.73 | 0.905534 |
Target: 5'- gGGAUcGCUCAgGACGGUGAACggCAc- -3' miRNA: 3'- -UCUGuCGAGU-CUGCCACUUGuaGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 110969 | 0.7 | 0.972985 |
Target: 5'- -uGCAGCUgaGGACGGgucaGAGCGUCGUg -3' miRNA: 3'- ucUGUCGAg-UCUGCCa---CUUGUAGUAg -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 107160 | 0.74 | 0.8924 |
Target: 5'- uGGGCAGCUCgcaGGugGGgcUGGACgcgGUCGUCa -3' miRNA: 3'- -UCUGUCGAG---UCugCC--ACUUG---UAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 106652 | 0.69 | 0.984422 |
Target: 5'- -cGCAGUUCuucacGACGGacGACAUCAUCa -3' miRNA: 3'- ucUGUCGAGu----CUGCCacUUGUAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 98137 | 0.66 | 0.999028 |
Target: 5'- cAGGCGGC---GGCGGUGcGCAUCGc- -3' miRNA: 3'- -UCUGUCGaguCUGCCACuUGUAGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 96273 | 0.69 | 0.98618 |
Target: 5'- uGGACGGCg-GGGCGGccagGGGCGUCAc- -3' miRNA: 3'- -UCUGUCGagUCUGCCa---CUUGUAGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 81895 | 0.66 | 0.99882 |
Target: 5'- cGGGCGuGCUgAGGuCGGcgUGGACGUCGUa -3' miRNA: 3'- -UCUGU-CGAgUCU-GCC--ACUUGUAGUAg -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 80401 | 0.72 | 0.939035 |
Target: 5'- cGACGGCgccgguGACGGUGGACgacaaccggGUCGUCu -3' miRNA: 3'- uCUGUCGagu---CUGCCACUUG---------UAGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 78929 | 0.68 | 0.994606 |
Target: 5'- cGACGGCgUCGGACagcauGGUG-GCGuUCAUCa -3' miRNA: 3'- uCUGUCG-AGUCUG-----CCACuUGU-AGUAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 72116 | 0.66 | 0.997954 |
Target: 5'- uGGACAGga-GGACGGUGGACG-CGg- -3' miRNA: 3'- -UCUGUCgagUCUGCCACUUGUaGUag -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 69188 | 0.7 | 0.975395 |
Target: 5'- cGACggAGUUCGcacagucgcugucGACGGUGAACAUCccGUCg -3' miRNA: 3'- uCUG--UCGAGU-------------CUGCCACUUGUAG--UAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 68295 | 0.68 | 0.992497 |
Target: 5'- aGGAgGGCUCggcgacggacuucgAGACGGUGu-CGUCGUg -3' miRNA: 3'- -UCUgUCGAG--------------UCUGCCACuuGUAGUAg -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 66785 | 0.66 | 0.99882 |
Target: 5'- cAGACGauGCUCccGCGGUgGAACAUguUCa -3' miRNA: 3'- -UCUGU--CGAGucUGCCA-CUUGUAguAG- -5' |
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16226 | 3' | -50.4 | NC_004065.1 | + | 61809 | 0.69 | 0.987783 |
Target: 5'- --cCAGCUCGGACGGc--GCuUCAUCg -3' miRNA: 3'- ucuGUCGAGUCUGCCacuUGuAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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