miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 3' -50.4 NC_004065.1 + 44843 0.66 0.999028
Target:  5'- cGGACAGCgac-ACGGgccgGAGCAgCGUCg -3'
miRNA:   3'- -UCUGUCGagucUGCCa---CUUGUaGUAG- -5'
16226 3' -50.4 NC_004065.1 + 44471 0.72 0.939035
Target:  5'- cGGugGGCaCAG-UGGUGAACAUgAUCa -3'
miRNA:   3'- -UCugUCGaGUCuGCCACUUGUAgUAG- -5'
16226 3' -50.4 NC_004065.1 + 43077 0.71 0.967029
Target:  5'- cAGACcgcacGUUCGGACGGUccGGGCAUCcgCg -3'
miRNA:   3'- -UCUGu----CGAGUCUGCCA--CUUGUAGuaG- -5'
16226 3' -50.4 NC_004065.1 + 42624 0.66 0.998257
Target:  5'- -aACAGCUCgcacguguccgagAGACGGUGGACcgUggAUCc -3'
miRNA:   3'- ucUGUCGAG-------------UCUGCCACUUGuaG--UAG- -5'
16226 3' -50.4 NC_004065.1 + 37507 0.68 0.994606
Target:  5'- uGGCGGCUCuccgccaaGCGGUGGACcUCAg- -3'
miRNA:   3'- uCUGUCGAGuc------UGCCACUUGuAGUag -5'
16226 3' -50.4 NC_004065.1 + 35626 0.7 0.970113
Target:  5'- cGGCGGCggcGGCGG-GGAUGUCAUCg -3'
miRNA:   3'- uCUGUCGaguCUGCCaCUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 28066 0.75 0.822164
Target:  5'- cGGAUAGgUCugcuGACGGUGGAguUCAUCu -3'
miRNA:   3'- -UCUGUCgAGu---CUGCCACUUguAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 24467 0.69 0.989237
Target:  5'- gGGGCAGCUCGGACa-UGGGCG-CGUa -3'
miRNA:   3'- -UCUGUCGAGUCUGccACUUGUaGUAg -5'
16226 3' -50.4 NC_004065.1 + 18957 0.66 0.99882
Target:  5'- uGGACGGCgcauauucgaGGAUgagcgGGUGGACAUCuGUCa -3'
miRNA:   3'- -UCUGUCGag--------UCUG-----CCACUUGUAG-UAG- -5'
16226 3' -50.4 NC_004065.1 + 9413 0.66 0.999028
Target:  5'- cGGACGGCaUAGugcaagauACGGUGGAgAUCAg- -3'
miRNA:   3'- -UCUGUCGaGUC--------UGCCACUUgUAGUag -5'
16226 3' -50.4 NC_004065.1 + 8533 0.66 0.99882
Target:  5'- cGAcCGGCUCGaACGGUGGAUcgCGg- -3'
miRNA:   3'- uCU-GUCGAGUcUGCCACUUGuaGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.