miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 3' -50.4 NC_004065.1 + 229658 0.66 0.998575
Target:  5'- cGGCGGCaguGGCaGGUGGGCGUCGg- -3'
miRNA:   3'- uCUGUCGaguCUG-CCACUUGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 24467 0.69 0.989237
Target:  5'- gGGGCAGCUCGGACa-UGGGCG-CGUa -3'
miRNA:   3'- -UCUGUCGAGUCUGccACUUGUaGUAg -5'
16226 3' -50.4 NC_004065.1 + 143820 0.68 0.992497
Target:  5'- -uACAGCUCggggcgaacaagggAGGCGGaaagcGGACGUCGUCu -3'
miRNA:   3'- ucUGUCGAG--------------UCUGCCa----CUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 68295 0.68 0.992497
Target:  5'- aGGAgGGCUCggcgacggacuucgAGACGGUGu-CGUCGUg -3'
miRNA:   3'- -UCUgUCGAG--------------UCUGCCACuuGUAGUAg -5'
16226 3' -50.4 NC_004065.1 + 37507 0.68 0.994606
Target:  5'- uGGCGGCUCuccgccaaGCGGUGGACcUCAg- -3'
miRNA:   3'- uCUGUCGAGuc------UGCCACUUGuAGUag -5'
16226 3' -50.4 NC_004065.1 + 78929 0.68 0.994606
Target:  5'- cGACGGCgUCGGACagcauGGUG-GCGuUCAUCa -3'
miRNA:   3'- uCUGUCG-AGUCUG-----CCACuUGU-AGUAG- -5'
16226 3' -50.4 NC_004065.1 + 165961 0.67 0.996609
Target:  5'- gAGuCuGCUCcaACGGUGGACGUCGcUCu -3'
miRNA:   3'- -UCuGuCGAGucUGCCACUUGUAGU-AG- -5'
16226 3' -50.4 NC_004065.1 + 72116 0.66 0.997954
Target:  5'- uGGACAGga-GGACGGUGGACG-CGg- -3'
miRNA:   3'- -UCUGUCgagUCUGCCACUUGUaGUag -5'
16226 3' -50.4 NC_004065.1 + 122779 0.66 0.997954
Target:  5'- cGACGcGCcgCAuGAUGGUGAGaGUCAUCu -3'
miRNA:   3'- uCUGU-CGa-GU-CUGCCACUUgUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 96273 0.69 0.98618
Target:  5'- uGGACGGCg-GGGCGGccagGGGCGUCAc- -3'
miRNA:   3'- -UCUGUCGagUCUGCCa---CUUGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 200867 0.7 0.975652
Target:  5'- cGGgGGCgCGGGCGGUGGcgaAUCGUCg -3'
miRNA:   3'- uCUgUCGaGUCUGCCACUug-UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 69188 0.7 0.975395
Target:  5'- cGACggAGUUCGcacagucgcugucGACGGUGAACAUCccGUCg -3'
miRNA:   3'- uCUG--UCGAGU-------------CUGCCACUUGUAG--UAG- -5'
16226 3' -50.4 NC_004065.1 + 166469 0.8 0.603477
Target:  5'- cGGACAGCaCGGGCGGUGAcACGUCGa- -3'
miRNA:   3'- -UCUGUCGaGUCUGCCACU-UGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 144989 0.76 0.776528
Target:  5'- -uGCGGCgUCAGAUGGUGGaucgcguuguACAUCGUCa -3'
miRNA:   3'- ucUGUCG-AGUCUGCCACU----------UGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 136487 0.75 0.839222
Target:  5'- cGGCGGCUCcGGCGGUcugGAccccaGCGUCAUCu -3'
miRNA:   3'- uCUGUCGAGuCUGCCA---CU-----UGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 117139 0.73 0.905534
Target:  5'- gGGAUcGCUCAgGACGGUGAACggCAc- -3'
miRNA:   3'- -UCUGuCGAGU-CUGCCACUUGuaGUag -5'
16226 3' -50.4 NC_004065.1 + 44471 0.72 0.939035
Target:  5'- cGGugGGCaCAG-UGGUGAACAUgAUCa -3'
miRNA:   3'- -UCugUCGaGUCuGCCACUUGUAgUAG- -5'
16226 3' -50.4 NC_004065.1 + 43077 0.71 0.967029
Target:  5'- cAGACcgcacGUUCGGACGGUccGGGCAUCcgCg -3'
miRNA:   3'- -UCUGu----CGAGUCUGCCA--CUUGUAGuaG- -5'
16226 3' -50.4 NC_004065.1 + 35626 0.7 0.970113
Target:  5'- cGGCGGCggcGGCGG-GGAUGUCAUCg -3'
miRNA:   3'- uCUGUCGaguCUGCCaCUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 122669 0.7 0.970113
Target:  5'- cGGGCGGCagGG-UGGUGAGCA-CGUCu -3'
miRNA:   3'- -UCUGUCGagUCuGCCACUUGUaGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.