miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 3' -50.4 NC_004065.1 + 43077 0.71 0.967029
Target:  5'- cAGACcgcacGUUCGGACGGUccGGGCAUCcgCg -3'
miRNA:   3'- -UCUGu----CGAGUCUGCCA--CUUGUAGuaG- -5'
16226 3' -50.4 NC_004065.1 + 35626 0.7 0.970113
Target:  5'- cGGCGGCggcGGCGG-GGAUGUCAUCg -3'
miRNA:   3'- uCUGUCGaguCUGCCaCUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 122669 0.7 0.970113
Target:  5'- cGGGCGGCagGG-UGGUGAGCA-CGUCu -3'
miRNA:   3'- -UCUGUCGagUCuGCCACUUGUaGUAG- -5'
16226 3' -50.4 NC_004065.1 + 69188 0.7 0.975395
Target:  5'- cGACggAGUUCGcacagucgcugucGACGGUGAACAUCccGUCg -3'
miRNA:   3'- uCUG--UCGAGU-------------CUGCCACUUGUAG--UAG- -5'
16226 3' -50.4 NC_004065.1 + 200867 0.7 0.975652
Target:  5'- cGGgGGCgCGGGCGGUGGcgaAUCGUCg -3'
miRNA:   3'- uCUgUCGaGUCUGCCACUug-UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 96273 0.69 0.98618
Target:  5'- uGGACGGCg-GGGCGGccagGGGCGUCAc- -3'
miRNA:   3'- -UCUGUCGagUCUGCCa---CUUGUAGUag -5'
16226 3' -50.4 NC_004065.1 + 177913 0.68 0.99174
Target:  5'- cGACGGUUCAG-CGGUcuACGUCgGUCu -3'
miRNA:   3'- uCUGUCGAGUCuGCCAcuUGUAG-UAG- -5'
16226 3' -50.4 NC_004065.1 + 207312 0.68 0.99174
Target:  5'- cAGACGGUUUcgGGACGGUGGACc----- -3'
miRNA:   3'- -UCUGUCGAG--UCUGCCACUUGuaguag -5'
16226 3' -50.4 NC_004065.1 + 139099 0.68 0.992805
Target:  5'- gGGAcCAGCUCAuGACGGUcGACGcgGUCu -3'
miRNA:   3'- -UCU-GUCGAGU-CUGCCAcUUGUagUAG- -5'
16226 3' -50.4 NC_004065.1 + 157116 0.68 0.992805
Target:  5'- gGGGC-GCcuUCAG-CGG-GGGCAUCAUCg -3'
miRNA:   3'- -UCUGuCG--AGUCuGCCaCUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 162435 0.68 0.993757
Target:  5'- -aGCAGCUCcGACGGcGAgaucaGCGUCGUg -3'
miRNA:   3'- ucUGUCGAGuCUGCCaCU-----UGUAGUAg -5'
16226 3' -50.4 NC_004065.1 + 176332 0.68 0.994606
Target:  5'- aGGGCGG-UCGGGCGGcGAcACgAUCAUCg -3'
miRNA:   3'- -UCUGUCgAGUCUGCCaCU-UG-UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 61809 0.69 0.987783
Target:  5'- --cCAGCUCGGACGGc--GCuUCAUCg -3'
miRNA:   3'- ucuGUCGAGUCUGCCacuUGuAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 106652 0.69 0.984422
Target:  5'- -cGCAGUUCuucacGACGGacGACAUCAUCa -3'
miRNA:   3'- ucUGUCGAGu----CUGCCacUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 139018 0.69 0.982498
Target:  5'- aGGACAcGCagCAGACGGUGAAacUCAc- -3'
miRNA:   3'- -UCUGU-CGa-GUCUGCCACUUguAGUag -5'
16226 3' -50.4 NC_004065.1 + 153623 0.7 0.978121
Target:  5'- cGGGCGGCgccacUCGGACGGcggcGAGC-UCAUCc -3'
miRNA:   3'- -UCUGUCG-----AGUCUGCCa---CUUGuAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 110969 0.7 0.972985
Target:  5'- -uGCAGCUgaGGACGGgucaGAGCGUCGUg -3'
miRNA:   3'- ucUGUCGAg-UCUGCCa---CUUGUAGUAg -5'
16226 3' -50.4 NC_004065.1 + 80401 0.72 0.939035
Target:  5'- cGACGGCgccgguGACGGUGGACgacaaccggGUCGUCu -3'
miRNA:   3'- uCUGUCGagu---CUGCCACUUG---------UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 107160 0.74 0.8924
Target:  5'- uGGGCAGCUCgcaGGugGGgcUGGACgcgGUCGUCa -3'
miRNA:   3'- -UCUGUCGAG---UCugCC--ACUUG---UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 9413 0.66 0.999028
Target:  5'- cGGACGGCaUAGugcaagauACGGUGGAgAUCAg- -3'
miRNA:   3'- -UCUGUCGaGUC--------UGCCACUUgUAGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.