miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 3' -50.4 NC_004065.1 + 28066 0.75 0.822164
Target:  5'- cGGAUAGgUCugcuGACGGUGGAguUCAUCu -3'
miRNA:   3'- -UCUGUCgAGu---CUGCCACUUguAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 42624 0.66 0.998257
Target:  5'- -aACAGCUCgcacguguccgagAGACGGUGGACcgUggAUCc -3'
miRNA:   3'- ucUGUCGAG-------------UCUGCCACUUGuaG--UAG- -5'
16226 3' -50.4 NC_004065.1 + 8533 0.66 0.99882
Target:  5'- cGAcCGGCUCGaACGGUGGAUcgCGg- -3'
miRNA:   3'- uCU-GUCGAGUcUGCCACUUGuaGUag -5'
16226 3' -50.4 NC_004065.1 + 9413 0.66 0.999028
Target:  5'- cGGACGGCaUAGugcaagauACGGUGGAgAUCAg- -3'
miRNA:   3'- -UCUGUCGaGUC--------UGCCACUUgUAGUag -5'
16226 3' -50.4 NC_004065.1 + 153623 0.7 0.978121
Target:  5'- cGGGCGGCgccacUCGGACGGcggcGAGC-UCAUCc -3'
miRNA:   3'- -UCUGUCG-----AGUCUGCCa---CUUGuAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 139018 0.69 0.982498
Target:  5'- aGGACAcGCagCAGACGGUGAAacUCAc- -3'
miRNA:   3'- -UCUGU-CGa-GUCUGCCACUUguAGUag -5'
16226 3' -50.4 NC_004065.1 + 61809 0.69 0.987783
Target:  5'- --cCAGCUCGGACGGc--GCuUCAUCg -3'
miRNA:   3'- ucuGUCGAGUCUGCCacuUGuAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 177913 0.68 0.99174
Target:  5'- cGACGGUUCAG-CGGUcuACGUCgGUCu -3'
miRNA:   3'- uCUGUCGAGUCuGCCAcuUGUAG-UAG- -5'
16226 3' -50.4 NC_004065.1 + 157116 0.68 0.992805
Target:  5'- gGGGC-GCcuUCAG-CGG-GGGCAUCAUCg -3'
miRNA:   3'- -UCUGuCG--AGUCuGCCaCUUGUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 194665 0.67 0.997567
Target:  5'- uGGCAGCUCcuucGACgaGGUGAAgGcuuUCGUCa -3'
miRNA:   3'- uCUGUCGAGu---CUG--CCACUUgU---AGUAG- -5'
16226 3' -50.4 NC_004065.1 + 176332 0.68 0.994606
Target:  5'- aGGGCGG-UCGGGCGGcGAcACgAUCAUCg -3'
miRNA:   3'- -UCUGUCgAGUCUGCCaCU-UG-UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 139099 0.68 0.992805
Target:  5'- gGGAcCAGCUCAuGACGGUcGACGcgGUCu -3'
miRNA:   3'- -UCU-GUCGAGU-CUGCCAcUUGUagUAG- -5'
16226 3' -50.4 NC_004065.1 + 107160 0.74 0.8924
Target:  5'- uGGGCAGCUCgcaGGugGGgcUGGACgcgGUCGUCa -3'
miRNA:   3'- -UCUGUCGAG---UCugCC--ACUUG---UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 126555 0.67 0.996609
Target:  5'- cGACAuccGCgcgCAGAUcGUGAACAUCAgcUCg -3'
miRNA:   3'- uCUGU---CGa--GUCUGcCACUUGUAGU--AG- -5'
16226 3' -50.4 NC_004065.1 + 80401 0.72 0.939035
Target:  5'- cGACGGCgccgguGACGGUGGACgacaaccggGUCGUCu -3'
miRNA:   3'- uCUGUCGagu---CUGCCACUUG---------UAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 207312 0.68 0.99174
Target:  5'- cAGACGGUUUcgGGACGGUGGACc----- -3'
miRNA:   3'- -UCUGUCGAG--UCUGCCACUUGuaguag -5'
16226 3' -50.4 NC_004065.1 + 202423 0.67 0.997121
Target:  5'- aGGAcCGGCUCAGAUagcgcgucuagGGUGuACGgcggCAUCg -3'
miRNA:   3'- -UCU-GUCGAGUCUG-----------CCACuUGUa---GUAG- -5'
16226 3' -50.4 NC_004065.1 + 146100 0.66 0.998575
Target:  5'- aGGACAuGCggaucuuccaGGACGG-GAAgGUCGUCa -3'
miRNA:   3'- -UCUGU-CGag--------UCUGCCaCUUgUAGUAG- -5'
16226 3' -50.4 NC_004065.1 + 110969 0.7 0.972985
Target:  5'- -uGCAGCUgaGGACGGgucaGAGCGUCGUg -3'
miRNA:   3'- ucUGUCGAg-UCUGCCa---CUUGUAGUAg -5'
16226 3' -50.4 NC_004065.1 + 106652 0.69 0.984422
Target:  5'- -cGCAGUUCuucacGACGGacGACAUCAUCa -3'
miRNA:   3'- ucUGUCGAGu----CUGCCacUUGUAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.