miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 5' -55.5 NC_004065.1 + 135390 0.66 0.975015
Target:  5'- gGUGAcgCgccggCCGcgcCCGACCCCGUCa -3'
miRNA:   3'- -CACUa-GaacuaGGCa--GGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 176567 0.66 0.975015
Target:  5'- -cGGUCUUGAaccUCuCGggcaCGACCaCCGUCg -3'
miRNA:   3'- caCUAGAACU---AG-GCag--GCUGG-GGCGG- -5'
16226 5' -55.5 NC_004065.1 + 52529 0.66 0.975015
Target:  5'- -gGAUacUGAcccCCGg-CGGCCCCGCCg -3'
miRNA:   3'- caCUAgaACUa--GGCagGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 197044 0.66 0.975015
Target:  5'- cUGGUCcgcGAggccUCCGUCauGCUCCGCCg -3'
miRNA:   3'- cACUAGaa-CU----AGGCAGgcUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 7548 0.66 0.972445
Target:  5'- -------cGAUCCGcUCCGAccuCCCCGUCu -3'
miRNA:   3'- cacuagaaCUAGGC-AGGCU---GGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 213617 0.66 0.972445
Target:  5'- -gGAUCUUcggaugucauaaGAUCCc-CgGACCCCGUCa -3'
miRNA:   3'- caCUAGAA------------CUAGGcaGgCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 78686 0.66 0.972445
Target:  5'- aUGGUCUUGAUCUGagCGGaUCUGCUg -3'
miRNA:   3'- cACUAGAACUAGGCagGCUgGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 226616 0.66 0.963599
Target:  5'- -aGGUCccgUUGAUCCGaggagCCGAaCCgUGCCa -3'
miRNA:   3'- caCUAG---AACUAGGCa----GGCU-GGgGCGG- -5'
16226 5' -55.5 NC_004065.1 + 106246 0.66 0.963599
Target:  5'- -aGGUCa--GUCCGUCC-ACCUCGUCg -3'
miRNA:   3'- caCUAGaacUAGGCAGGcUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 29201 0.66 0.962617
Target:  5'- -gGGUCguccccgucgccCCGUCCGAuCCCCGCg -3'
miRNA:   3'- caCUAGaacua-------GGCAGGCU-GGGGCGg -5'
16226 5' -55.5 NC_004065.1 + 165638 0.67 0.960253
Target:  5'- -aGGUCggcgucggUGAauUCCcUCCGGCCgCGCCc -3'
miRNA:   3'- caCUAGa-------ACU--AGGcAGGCUGGgGCGG- -5'
16226 5' -55.5 NC_004065.1 + 133356 0.67 0.960253
Target:  5'- -cGAUCc---UCCGUCgggCGAgCCCGCCg -3'
miRNA:   3'- caCUAGaacuAGGCAG---GCUgGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 189250 0.67 0.959908
Target:  5'- cGUGAgggacccUCUcaacgaaGAUCCGUCCGuCCUCGUg -3'
miRNA:   3'- -CACU-------AGAa------CUAGGCAGGCuGGGGCGg -5'
16226 5' -55.5 NC_004065.1 + 40105 0.67 0.956702
Target:  5'- uUGggCggUGGUuuGUCCaucACCCUGCCg -3'
miRNA:   3'- cACuaGa-ACUAggCAGGc--UGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 6055 0.67 0.956702
Target:  5'- -cGAgCggGAcggccaUCCGUCCugguGACCCUGCCg -3'
miRNA:   3'- caCUaGaaCU------AGGCAGG----CUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 107058 0.67 0.956702
Target:  5'- -cGGUUUUGGUCaCGUUCGAgCagCGCCu -3'
miRNA:   3'- caCUAGAACUAG-GCAGGCUgGg-GCGG- -5'
16226 5' -55.5 NC_004065.1 + 207106 0.67 0.952939
Target:  5'- -cGAgacgGAaCCG-CCGACCgCCGCCa -3'
miRNA:   3'- caCUagaaCUaGGCaGGCUGG-GGCGG- -5'
16226 5' -55.5 NC_004065.1 + 108254 0.67 0.952939
Target:  5'- -gGcgCUU--UCCGUCCGA-CCCGUCa -3'
miRNA:   3'- caCuaGAAcuAGGCAGGCUgGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 200501 0.67 0.948963
Target:  5'- cUGGUCUcugaagUGAUCCGaUCgGAUCgCCGCg -3'
miRNA:   3'- cACUAGA------ACUAGGC-AGgCUGG-GGCGg -5'
16226 5' -55.5 NC_004065.1 + 76366 0.67 0.94477
Target:  5'- -cGAUCUccAUCgCG-CCGGCgCCGCCg -3'
miRNA:   3'- caCUAGAacUAG-GCaGGCUGgGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.