miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 5' -55.5 NC_004065.1 + 218186 1.12 0.003568
Target:  5'- gGUGAUCUUGAUCCGUCCGACCCCGCCa -3'
miRNA:   3'- -CACUAGAACUAGGCAGGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 64172 0.83 0.243448
Target:  5'- cGUGAga--GA-CCGUCCGGCCCCGCCg -3'
miRNA:   3'- -CACUagaaCUaGGCAGGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 27869 0.79 0.391089
Target:  5'- cUGGUCgaGAuggacggccgggaccUCCGUCCGAUCCUGCCg -3'
miRNA:   3'- cACUAGaaCU---------------AGGCAGGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 130080 0.74 0.667064
Target:  5'- gGUGGUCgacuacggcGAUgCCGUUCGGCgCCCGCCc -3'
miRNA:   3'- -CACUAGaa-------CUA-GGCAGGCUG-GGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 156646 0.73 0.715812
Target:  5'- -gGAUCUUGAUCC-UCCugauGGCCUCGCa -3'
miRNA:   3'- caCUAGAACUAGGcAGG----CUGGGGCGg -5'
16226 5' -55.5 NC_004065.1 + 179167 0.72 0.753656
Target:  5'- -cGAUCUc--UCCGUCagaGGCCCCGCg -3'
miRNA:   3'- caCUAGAacuAGGCAGg--CUGGGGCGg -5'
16226 5' -55.5 NC_004065.1 + 173627 0.72 0.753656
Target:  5'- -cGAUCgccacucgcUGAUCgGagcgcUCCGACCCUGCCg -3'
miRNA:   3'- caCUAGa--------ACUAGgC-----AGGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 112799 0.71 0.799515
Target:  5'- -cGGUCUgucgcucgcgaCGUCCGuCCCCGCCa -3'
miRNA:   3'- caCUAGAacuag------GCAGGCuGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 221701 0.71 0.802108
Target:  5'- -gGAUCgcGAUCCGUUCGGCCgucugagguacacgaCCGCUa -3'
miRNA:   3'- caCUAGaaCUAGGCAGGCUGG---------------GGCGG- -5'
16226 5' -55.5 NC_004065.1 + 131200 0.7 0.831354
Target:  5'- ----gCUUGcgucaaggaauaaAUCCGUCCGGCCCaCGCUg -3'
miRNA:   3'- cacuaGAAC-------------UAGGCAGGCUGGG-GCGG- -5'
16226 5' -55.5 NC_004065.1 + 207462 0.7 0.83216
Target:  5'- cGUGcgC-UGAUCUGUCUGugCCgCGUCg -3'
miRNA:   3'- -CACuaGaACUAGGCAGGCugGG-GCGG- -5'
16226 5' -55.5 NC_004065.1 + 125888 0.7 0.83216
Target:  5'- uUGAUCUUGuucUCCG-CCGugcuguagGCCCgGCCg -3'
miRNA:   3'- cACUAGAACu--AGGCaGGC--------UGGGgCGG- -5'
16226 5' -55.5 NC_004065.1 + 167624 0.7 0.840131
Target:  5'- cUGGUgCUgGAUCCGcggCCGccacCCCCGCCg -3'
miRNA:   3'- cACUA-GAaCUAGGCa--GGCu---GGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 126265 0.7 0.855536
Target:  5'- cUGcgCgacGGUCCGga-GGCCCCGCCg -3'
miRNA:   3'- cACuaGaa-CUAGGCaggCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 145256 0.7 0.855536
Target:  5'- aGUGAgagcaucCUUaGAgagaCCGUCCGAgCCUCGCCg -3'
miRNA:   3'- -CACUa------GAA-CUa---GGCAGGCU-GGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 164710 0.7 0.862958
Target:  5'- gGUGAUg-UGGUCCG-CCG-CCUCGCUg -3'
miRNA:   3'- -CACUAgaACUAGGCaGGCuGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 165806 0.69 0.884037
Target:  5'- -aGGUCUUGuccucgCCG-CCGACacugccuccgCCCGCCg -3'
miRNA:   3'- caCUAGAACua----GGCaGGCUG----------GGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 27725 0.69 0.897055
Target:  5'- cGUGcUCgcGcgCUGUCCaaagaucugauGACCCCGCCg -3'
miRNA:   3'- -CACuAGaaCuaGGCAGG-----------CUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 166408 0.69 0.897055
Target:  5'- cUGGUCggGAcUCGgaccaCCGACUCCGCCu -3'
miRNA:   3'- cACUAGaaCUaGGCa----GGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 23191 0.69 0.903242
Target:  5'- -aGGUCggcc-CCG-CCGAUCCCGCCc -3'
miRNA:   3'- caCUAGaacuaGGCaGGCUGGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.