miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16226 5' -55.5 NC_004065.1 + 77703 0.67 0.94477
Target:  5'- -aGGUCgaag-CCGUCauCGuCCCCGCCg -3'
miRNA:   3'- caCUAGaacuaGGCAG--GCuGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 123075 0.67 0.940358
Target:  5'- ---uUUUUGcUCCGUUCGACucgcauCCCGCCg -3'
miRNA:   3'- cacuAGAACuAGGCAGGCUG------GGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 36548 0.68 0.935724
Target:  5'- ----aCggGcAUCCGUCCGGCgCCCGCg -3'
miRNA:   3'- cacuaGaaC-UAGGCAGGCUG-GGGCGg -5'
16226 5' -55.5 NC_004065.1 + 61386 0.68 0.930868
Target:  5'- -cGGUCg----CCGcgCCGGCUCCGCCc -3'
miRNA:   3'- caCUAGaacuaGGCa-GGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 164673 0.68 0.927847
Target:  5'- -aGGUC--GAUCCGaCCGACCcacccgcagcugcugCCGCCg -3'
miRNA:   3'- caCUAGaaCUAGGCaGGCUGG---------------GGCGG- -5'
16226 5' -55.5 NC_004065.1 + 127383 0.68 0.925788
Target:  5'- -aGAUCUcg--CCGUUCGAggacUCCCGCCu -3'
miRNA:   3'- caCUAGAacuaGGCAGGCU----GGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 117438 0.68 0.923694
Target:  5'- -cGAUCgcgagucaaauacUGcgUCGUCCGGCUCCGCg -3'
miRNA:   3'- caCUAGa------------ACuaGGCAGGCUGGGGCGg -5'
16226 5' -55.5 NC_004065.1 + 132445 0.68 0.920485
Target:  5'- --cGUgUUGcgCCGUCCGcCCCUGUCu -3'
miRNA:   3'- cacUAgAACuaGGCAGGCuGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 158977 0.68 0.920485
Target:  5'- -gGAUCUUGuaUCGUgCCu-CCCCGCCg -3'
miRNA:   3'- caCUAGAACuaGGCA-GGcuGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 201054 0.68 0.914959
Target:  5'- -gGAgacUGAUCCGUgUCGuagcGCCCCGCCu -3'
miRNA:   3'- caCUagaACUAGGCA-GGC----UGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 87929 0.68 0.914959
Target:  5'- cUGAUCgaaGAcgaggcacucguUCCGUUCGGaCCCGCCg -3'
miRNA:   3'- cACUAGaa-CU------------AGGCAGGCUgGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 23191 0.69 0.903242
Target:  5'- -aGGUCggcc-CCG-CCGAUCCCGCCc -3'
miRNA:   3'- caCUAGaacuaGGCaGGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 166408 0.69 0.897055
Target:  5'- cUGGUCggGAcUCGgaccaCCGACUCCGCCu -3'
miRNA:   3'- cACUAGaaCUaGGCa----GGCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 27725 0.69 0.897055
Target:  5'- cGUGcUCgcGcgCUGUCCaaagaucugauGACCCCGCCg -3'
miRNA:   3'- -CACuAGaaCuaGGCAGG-----------CUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 165806 0.69 0.884037
Target:  5'- -aGGUCUUGuccucgCCG-CCGACacugccuccgCCCGCCg -3'
miRNA:   3'- caCUAGAACua----GGCaGGCUG----------GGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 164710 0.7 0.862958
Target:  5'- gGUGAUg-UGGUCCG-CCG-CCUCGCUg -3'
miRNA:   3'- -CACUAgaACUAGGCaGGCuGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 126265 0.7 0.855536
Target:  5'- cUGcgCgacGGUCCGga-GGCCCCGCCg -3'
miRNA:   3'- cACuaGaa-CUAGGCaggCUGGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 145256 0.7 0.855536
Target:  5'- aGUGAgagcaucCUUaGAgagaCCGUCCGAgCCUCGCCg -3'
miRNA:   3'- -CACUa------GAA-CUa---GGCAGGCU-GGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 167624 0.7 0.840131
Target:  5'- cUGGUgCUgGAUCCGcggCCGccacCCCCGCCg -3'
miRNA:   3'- cACUA-GAaCUAGGCa--GGCu---GGGGCGG- -5'
16226 5' -55.5 NC_004065.1 + 125888 0.7 0.83216
Target:  5'- uUGAUCUUGuucUCCG-CCGugcuguagGCCCgGCCg -3'
miRNA:   3'- cACUAGAACu--AGGCaGGC--------UGGGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.