miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16227 3' -56.3 NC_004065.1 + 221225 1.09 0.005147
Target:  5'- uGGUGAUCGGCGGACCUCCCAAACCGUu -3'
miRNA:   3'- -CCACUAGCCGCCUGGAGGGUUUGGCA- -5'
16227 3' -56.3 NC_004065.1 + 106969 0.81 0.271887
Target:  5'- cGUGAUCGaGCGGGuCCUCCCGAGCgGa -3'
miRNA:   3'- cCACUAGC-CGCCU-GGAGGGUUUGgCa -5'
16227 3' -56.3 NC_004065.1 + 208393 0.8 0.297512
Target:  5'- cGUGAuuaUCGGCuGGGCCUCCCAGAgCGg -3'
miRNA:   3'- cCACU---AGCCG-CCUGGAGGGUUUgGCa -5'
16227 3' -56.3 NC_004065.1 + 68507 0.79 0.354272
Target:  5'- aGGUGAggCGGCGGACgcauCUCCCGgaGGCCGa -3'
miRNA:   3'- -CCACUa-GCCGCCUG----GAGGGU--UUGGCa -5'
16227 3' -56.3 NC_004065.1 + 116943 0.77 0.444001
Target:  5'- cGGUGGUCuGGUGGGCCUCCUgcucgAAAuCCGUu -3'
miRNA:   3'- -CCACUAG-CCGCCUGGAGGG-----UUU-GGCA- -5'
16227 3' -56.3 NC_004065.1 + 44543 0.74 0.60343
Target:  5'- cGGUGG-CGGCGcuGCCUCCCGAcCCGc -3'
miRNA:   3'- -CCACUaGCCGCc-UGGAGGGUUuGGCa -5'
16227 3' -56.3 NC_004065.1 + 114939 0.72 0.70136
Target:  5'- cGGUGAucaucaucagUCGGCGccgccGGCCUCCaGAACCGa -3'
miRNA:   3'- -CCACU----------AGCCGC-----CUGGAGGgUUUGGCa -5'
16227 3' -56.3 NC_004065.1 + 42008 0.72 0.710985
Target:  5'- -uUGGUCGugucuaccgucGCGGACCUCCgCGAGCCa- -3'
miRNA:   3'- ccACUAGC-----------CGCCUGGAGG-GUUUGGca -5'
16227 3' -56.3 NC_004065.1 + 120559 0.72 0.710985
Target:  5'- cGGcGGUCGGCgcgagcgggcgGGACCUCCgGcGCCGg -3'
miRNA:   3'- -CCaCUAGCCG-----------CCUGGAGGgUuUGGCa -5'
16227 3' -56.3 NC_004065.1 + 206290 0.72 0.720547
Target:  5'- aGGUGAUCGGaucggaCGGACCggaCGGACCGc -3'
miRNA:   3'- -CCACUAGCC------GCCUGGaggGUUUGGCa -5'
16227 3' -56.3 NC_004065.1 + 103750 0.71 0.767146
Target:  5'- cGGUucGcgCGGCgGGGCCUCC-GGACCGUc -3'
miRNA:   3'- -CCA--CuaGCCG-CCUGGAGGgUUUGGCA- -5'
16227 3' -56.3 NC_004065.1 + 216264 0.71 0.767146
Target:  5'- cGGUGAUCu-CGGGCUUCCUcgAAACCGa -3'
miRNA:   3'- -CCACUAGccGCCUGGAGGG--UUUGGCa -5'
16227 3' -56.3 NC_004065.1 + 116569 0.71 0.770768
Target:  5'- cGUGAUugauauugaggggcaCGGCGGGCC-CCCcGGCCGc -3'
miRNA:   3'- cCACUA---------------GCCGCCUGGaGGGuUUGGCa -5'
16227 3' -56.3 NC_004065.1 + 112681 0.7 0.810973
Target:  5'- -cUGA-CGGCGGACC-CCgaCAAGCCGg -3'
miRNA:   3'- ccACUaGCCGCCUGGaGG--GUUUGGCa -5'
16227 3' -56.3 NC_004065.1 + 174471 0.7 0.810974
Target:  5'- cGGUGAucUCGGCGGACCuuugacUCUCGGucCUGUu -3'
miRNA:   3'- -CCACU--AGCCGCCUGG------AGGGUUu-GGCA- -5'
16227 3' -56.3 NC_004065.1 + 173970 0.69 0.858555
Target:  5'- gGGUGGUCcacgaccuggGGCGcGAacCCUCCgAGGCCGa -3'
miRNA:   3'- -CCACUAG----------CCGC-CU--GGAGGgUUUGGCa -5'
16227 3' -56.3 NC_004065.1 + 4414 0.69 0.872968
Target:  5'- cGGUGGccaCGGCGGGCCUgacgcugaccCUCGGGCCu- -3'
miRNA:   3'- -CCACUa--GCCGCCUGGA----------GGGUUUGGca -5'
16227 3' -56.3 NC_004065.1 + 194400 0.69 0.872968
Target:  5'- uGUGGggacagagCGGCGGGCgUUCCAGACgGa -3'
miRNA:   3'- cCACUa-------GCCGCCUGgAGGGUUUGgCa -5'
16227 3' -56.3 NC_004065.1 + 110739 0.69 0.872968
Target:  5'- --gGAUUGGCGGACgUCCCcuucuggcGCCGc -3'
miRNA:   3'- ccaCUAGCCGCCUGgAGGGuu------UGGCa -5'
16227 3' -56.3 NC_004065.1 + 212964 0.68 0.893082
Target:  5'- --aGAUCGGUGGACCUCUCuggugggauGAUUGa -3'
miRNA:   3'- ccaCUAGCCGCCUGGAGGGu--------UUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.