miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16227 5' -57 NC_004065.1 + 154231 0.66 0.940358
Target:  5'- --cGGGUggGAGCCgagGCCGCCGUgAg -3'
miRNA:   3'- gguCCUAuaCUUGGga-CGGCGGCGgU- -5'
16227 5' -57 NC_004065.1 + 126893 0.66 0.940358
Target:  5'- aCAuGAUcgcGUGAGCC--GCCGUCGCCAa -3'
miRNA:   3'- gGUcCUA---UACUUGGgaCGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 93387 0.66 0.940358
Target:  5'- aCCAGGAUccacgccGCUCcgGaCCGCCGCCu -3'
miRNA:   3'- -GGUCCUAuacu---UGGGa-C-GGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 48464 0.66 0.940358
Target:  5'- gCAGGAgGUGAcgguGCCgUaGUCGCCGCg- -3'
miRNA:   3'- gGUCCUaUACU----UGGgA-CGGCGGCGgu -5'
16227 5' -57 NC_004065.1 + 62672 0.66 0.940358
Target:  5'- gCAGcGGc---GACCCUGuCUGCCGCCGc -3'
miRNA:   3'- gGUC-CUauacUUGGGAC-GGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 36364 0.66 0.939904
Target:  5'- aCAGGcgaGUGcgucGCUaucgucgcucucgCUGCCGCCGCCAc -3'
miRNA:   3'- gGUCCua-UACu---UGG-------------GACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 158335 0.66 0.937604
Target:  5'- -gAGGAcgcgccgcuCCCguUGCCGCCGCCGc -3'
miRNA:   3'- ggUCCUauacuu---GGG--ACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 6058 0.66 0.936197
Target:  5'- gCGGGAcggccauccguccugGUG-ACCCUGCCGCUGaCGa -3'
miRNA:   3'- gGUCCUa--------------UACuUGGGACGGCGGCgGU- -5'
16227 5' -57 NC_004065.1 + 147099 0.66 0.935724
Target:  5'- gCCAGGGUcUGGGCCgaGCUcuucgGCCuCCAg -3'
miRNA:   3'- -GGUCCUAuACUUGGgaCGG-----CGGcGGU- -5'
16227 5' -57 NC_004065.1 + 180344 0.66 0.935724
Target:  5'- aUCAGGAg--GGACgCCUGCUccggcggcaCCGCCAc -3'
miRNA:   3'- -GGUCCUauaCUUG-GGACGGc--------GGCGGU- -5'
16227 5' -57 NC_004065.1 + 183139 0.66 0.935724
Target:  5'- uCCAGGccGUGcAUCCUcGCCGUCacgGCCAg -3'
miRNA:   3'- -GGUCCuaUACuUGGGA-CGGCGG---CGGU- -5'
16227 5' -57 NC_004065.1 + 24570 0.66 0.934291
Target:  5'- gUCGGGAUcgcgcgguccgcgcGUGucgucgccGCCaCcGCCGCCGCCGg -3'
miRNA:   3'- -GGUCCUA--------------UACu-------UGG-GaCGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 135157 0.66 0.931363
Target:  5'- aCGGGGacgucgAUGAcgacgagggacuGCCCgagggacuguugggcGCCGCCGCCGa -3'
miRNA:   3'- gGUCCUa-----UACU------------UGGGa--------------CGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 228850 0.66 0.930868
Target:  5'- aCCGGGAUGUGAAgC-UGUCGaCUGCg- -3'
miRNA:   3'- -GGUCCUAUACUUgGgACGGC-GGCGgu -5'
16227 5' -57 NC_004065.1 + 27832 0.66 0.930868
Target:  5'- cCCGGGGUgGUGGcugGCCgUGgUGCCGCgGg -3'
miRNA:   3'- -GGUCCUA-UACU---UGGgACgGCGGCGgU- -5'
16227 5' -57 NC_004065.1 + 35167 0.66 0.930868
Target:  5'- gUCAGGAa---GAUCgUGuCCGCCGCCGu -3'
miRNA:   3'- -GGUCCUauacUUGGgAC-GGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 63246 0.66 0.930868
Target:  5'- --cGGAcgGUcGACCCUGCCGaUCGCUAu -3'
miRNA:   3'- gguCCUa-UAcUUGGGACGGC-GGCGGU- -5'
16227 5' -57 NC_004065.1 + 197649 0.66 0.929367
Target:  5'- aCCGGGcucagcuuguacacGUAgGGACCCUcGCCGuaccgaCCGCCGc -3'
miRNA:   3'- -GGUCC--------------UAUaCUUGGGA-CGGC------GGCGGU- -5'
16227 5' -57 NC_004065.1 + 134226 0.66 0.927847
Target:  5'- cCCGGGGgcugcGUGAgcGCCCUggaacccgucaccgaGCCGCaCGUCGa -3'
miRNA:   3'- -GGUCCUa----UACU--UGGGA---------------CGGCG-GCGGU- -5'
16227 5' -57 NC_004065.1 + 19875 0.66 0.925788
Target:  5'- gCUAGaGAcccUGAuccACCCcGUCGCCGCCGa -3'
miRNA:   3'- -GGUC-CUau-ACU---UGGGaCGGCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.