miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16227 5' -57 NC_004065.1 + 221263 1.1 0.003292
Target:  5'- gCCAGGAUAUGAACCCUGCCGCCGCCAc -3'
miRNA:   3'- -GGUCCUAUACUUGGGACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 97679 0.82 0.19668
Target:  5'- gCAGGAUGUGAuacucgcgguCgCUGCCGCCGCCGc -3'
miRNA:   3'- gGUCCUAUACUu---------GgGACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 65632 0.79 0.319725
Target:  5'- aCCAGGAggaccugacGGACCCgcUGCCGCUGCCGc -3'
miRNA:   3'- -GGUCCUaua------CUUGGG--ACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 115180 0.77 0.37191
Target:  5'- gCCAGGAUGgcccUGGAUCCggccgugGCCGCCGCg- -3'
miRNA:   3'- -GGUCCUAU----ACUUGGGa------CGGCGGCGgu -5'
16227 5' -57 NC_004065.1 + 426 0.75 0.464841
Target:  5'- cCCGGGggGUGAACCCccUGgaGCCGCCc -3'
miRNA:   3'- -GGUCCuaUACUUGGG--ACggCGGCGGu -5'
16227 5' -57 NC_004065.1 + 86683 0.75 0.464841
Target:  5'- cCCAGuGUucccucGCCCUGCCGCCGCCc -3'
miRNA:   3'- -GGUCcUAuacu--UGGGACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 114251 0.75 0.473885
Target:  5'- cCCGGGAccgccAACCCUGCCGCCuCCGc -3'
miRNA:   3'- -GGUCCUauac-UUGGGACGGCGGcGGU- -5'
16227 5' -57 NC_004065.1 + 66680 0.75 0.483016
Target:  5'- aCCAGGAUGacuUGcAGCaagCUGCCGuCCGCCAc -3'
miRNA:   3'- -GGUCCUAU---AC-UUGg--GACGGC-GGCGGU- -5'
16227 5' -57 NC_004065.1 + 149685 0.75 0.492231
Target:  5'- uCCAGGGUcugcagGUGAACgCCgggggGCCGCgGCCGc -3'
miRNA:   3'- -GGUCCUA------UACUUG-GGa----CGGCGgCGGU- -5'
16227 5' -57 NC_004065.1 + 204629 0.75 0.501526
Target:  5'- gCAuGGAUAUGcGCCCUGuCCGCCcCCAc -3'
miRNA:   3'- gGU-CCUAUACuUGGGAC-GGCGGcGGU- -5'
16227 5' -57 NC_004065.1 + 191575 0.74 0.529853
Target:  5'- aCCAGuGugccgAUGAGCcuCCUGCCGCCGuCCAc -3'
miRNA:   3'- -GGUC-Cua---UACUUG--GGACGGCGGC-GGU- -5'
16227 5' -57 NC_004065.1 + 6110 0.73 0.578253
Target:  5'- aCGGaGAUGgagGAACCaucacGCCGCCGCCGc -3'
miRNA:   3'- gGUC-CUAUa--CUUGGga---CGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 194381 0.73 0.582172
Target:  5'- aCAGGGggacccugucgccgAUGAcauCCCcGCCGCCGCCGc -3'
miRNA:   3'- gGUCCUa-------------UACUu--GGGaCGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 162343 0.72 0.647325
Target:  5'- -aAGaGAUGgaGGGCCCgccGCCGCCGCCGc -3'
miRNA:   3'- ggUC-CUAUa-CUUGGGa--CGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 210981 0.72 0.647325
Target:  5'- aCA-GAUGUGGGCCaCcGCCGCCGUCGu -3'
miRNA:   3'- gGUcCUAUACUUGG-GaCGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 189868 0.72 0.657204
Target:  5'- aCCGGGAUaaugGUGGACaacgagGCCGCCGUCu -3'
miRNA:   3'- -GGUCCUA----UACUUGgga---CGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 69028 0.72 0.676899
Target:  5'- aUCAcGGAUAgcagcagcAGCCC-GCCGCCGCCGg -3'
miRNA:   3'- -GGU-CCUAUac------UUGGGaCGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 133596 0.71 0.686698
Target:  5'- uCCAGGuAUAUaaguccGCCgUGCCGCCGCUc -3'
miRNA:   3'- -GGUCC-UAUAcu----UGGgACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 18967 0.71 0.706163
Target:  5'- aCCuGGGUGUGGugGCUgUGCUGCUGCUg -3'
miRNA:   3'- -GGuCCUAUACU--UGGgACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 106153 0.71 0.706163
Target:  5'- aUAGGuaGUGGACCCUaGgCGUCGCCAc -3'
miRNA:   3'- gGUCCuaUACUUGGGA-CgGCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.