miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16227 5' -57 NC_004065.1 + 120427 0.71 0.715812
Target:  5'- cCCGGGGgucGAGCgcggCCUGauaCGCCGCCAg -3'
miRNA:   3'- -GGUCCUauaCUUG----GGACg--GCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 200037 0.71 0.715812
Target:  5'- gCCucuGGcgAU--ACCaCUGCCGCCGCCGc -3'
miRNA:   3'- -GGu--CCuaUAcuUGG-GACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 120823 0.71 0.715812
Target:  5'- gCAGGAa--GAGgCCgaggcGCCGCCGCCGg -3'
miRNA:   3'- gGUCCUauaCUUgGGa----CGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 54901 0.71 0.725394
Target:  5'- aCGGGuUGUG-GCCCUGCCugacCCGCCu -3'
miRNA:   3'- gGUCCuAUACuUGGGACGGc---GGCGGu -5'
16227 5' -57 NC_004065.1 + 88420 0.7 0.744324
Target:  5'- gCCGGcagcgGAGCCC-GCCGCCGUCGc -3'
miRNA:   3'- -GGUCcuauaCUUGGGaCGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 84066 0.7 0.744324
Target:  5'- aUAGGAgccgAUGGcucggAUCCUGCCGaCCGUCAg -3'
miRNA:   3'- gGUCCUa---UACU-----UGGGACGGC-GGCGGU- -5'
16227 5' -57 NC_004065.1 + 164670 0.7 0.753656
Target:  5'- gCCAGGucgAUccGAccgACCCacccgcagcugcUGCCGCCGCCGc -3'
miRNA:   3'- -GGUCC---UAuaCU---UGGG------------ACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 203581 0.7 0.761969
Target:  5'- aCGGGAugcucauggcuugUAUGuGCUCUcggagGCCGCCGCCGc -3'
miRNA:   3'- gGUCCU-------------AUACuUGGGA-----CGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 165695 0.7 0.762888
Target:  5'- cCCAGGGccucgUGUGAGCCCgGCUGUC-CCu -3'
miRNA:   3'- -GGUCCU-----AUACUUGGGaCGGCGGcGGu -5'
16227 5' -57 NC_004065.1 + 173296 0.7 0.772011
Target:  5'- -gAGGAga-GAcaGCUgCUGCCGCCGCCGc -3'
miRNA:   3'- ggUCCUauaCU--UGG-GACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 89993 0.7 0.772011
Target:  5'- aCGGGAgc-GAACCCgacggaGCCGUCGCUu -3'
miRNA:   3'- gGUCCUauaCUUGGGa-----CGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 75835 0.7 0.793415
Target:  5'- uUCAGGAUGcgagaggcgacggcGAGCCagcaacaGCCGCCGCCGc -3'
miRNA:   3'- -GGUCCUAUa-------------CUUGGga-----CGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 80940 0.69 0.796037
Target:  5'- cCCAGcagaagacGAUcGUGAcgacgaccccgaucGgCCUGCCGCCGCCGu -3'
miRNA:   3'- -GGUC--------CUA-UACU--------------UgGGACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 124177 0.69 0.798647
Target:  5'- uCCAGGGUGUGcGCgCagGCCGCCGa-- -3'
miRNA:   3'- -GGUCCUAUACuUGgGa-CGGCGGCggu -5'
16227 5' -57 NC_004065.1 + 167465 0.69 0.798647
Target:  5'- -aAGGAUAUGGuACUaCUGCUGCUGCUg -3'
miRNA:   3'- ggUCCUAUACU-UGG-GACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 24407 0.69 0.798647
Target:  5'- gCAGGuagAUGuaGAUCUUGCCGCUGCUg -3'
miRNA:   3'- gGUCCua-UAC--UUGGGACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 114306 0.69 0.807256
Target:  5'- gUCGGGAUGcgcUGAuguccAUCCUgGCgGCCGCCGc -3'
miRNA:   3'- -GGUCCUAU---ACU-----UGGGA-CGgCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 174288 0.69 0.815715
Target:  5'- aUAGcAUGUGGACCCUGCUcaCCGUCAg -3'
miRNA:   3'- gGUCcUAUACUUGGGACGGc-GGCGGU- -5'
16227 5' -57 NC_004065.1 + 140921 0.69 0.815715
Target:  5'- uCCAGGGcAUGAGCacgcgCCUGaCGCCGCa- -3'
miRNA:   3'- -GGUCCUaUACUUG-----GGACgGCGGCGgu -5'
16227 5' -57 NC_004065.1 + 161470 0.69 0.824019
Target:  5'- uCCGGGccuUcgGGACgCCgucaccuccGCCGCCGCCu -3'
miRNA:   3'- -GGUCCu--AuaCUUG-GGa--------CGGCGGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.