miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16227 5' -57 NC_004065.1 + 161470 0.69 0.824019
Target:  5'- uCCGGGccuUcgGGACgCCgucaccuccGCCGCCGCCu -3'
miRNA:   3'- -GGUCCu--AuaCUUG-GGa--------CGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 54901 0.71 0.725394
Target:  5'- aCGGGuUGUG-GCCCUGCCugacCCGCCu -3'
miRNA:   3'- gGUCCuAUACuUGGGACGGc---GGCGGu -5'
16227 5' -57 NC_004065.1 + 88420 0.7 0.744324
Target:  5'- gCCGGcagcgGAGCCC-GCCGCCGUCGc -3'
miRNA:   3'- -GGUCcuauaCUUGGGaCGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 164670 0.7 0.753656
Target:  5'- gCCAGGucgAUccGAccgACCCacccgcagcugcUGCCGCCGCCGc -3'
miRNA:   3'- -GGUCC---UAuaCU---UGGG------------ACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 165695 0.7 0.762888
Target:  5'- cCCAGGGccucgUGUGAGCCCgGCUGUC-CCu -3'
miRNA:   3'- -GGUCCU-----AUACUUGGGaCGGCGGcGGu -5'
16227 5' -57 NC_004065.1 + 24407 0.69 0.798647
Target:  5'- gCAGGuagAUGuaGAUCUUGCCGCUGCUg -3'
miRNA:   3'- gGUCCua-UAC--UUGGGACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 167465 0.69 0.798647
Target:  5'- -aAGGAUAUGGuACUaCUGCUGCUGCUg -3'
miRNA:   3'- ggUCCUAUACU-UGG-GACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 124177 0.69 0.798647
Target:  5'- uCCAGGGUGUGcGCgCagGCCGCCGa-- -3'
miRNA:   3'- -GGUCCUAUACuUGgGa-CGGCGGCggu -5'
16227 5' -57 NC_004065.1 + 114306 0.69 0.807256
Target:  5'- gUCGGGAUGcgcUGAuguccAUCCUgGCgGCCGCCGc -3'
miRNA:   3'- -GGUCCUAU---ACU-----UGGGA-CGgCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 18967 0.71 0.706163
Target:  5'- aCCuGGGUGUGGugGCUgUGCUGCUGCUg -3'
miRNA:   3'- -GGuCCUAUACU--UGGgACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 106153 0.71 0.706163
Target:  5'- aUAGGuaGUGGACCCUaGgCGUCGCCAc -3'
miRNA:   3'- gGUCCuaUACUUGGGA-CgGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 133596 0.71 0.686698
Target:  5'- uCCAGGuAUAUaaguccGCCgUGCCGCCGCUc -3'
miRNA:   3'- -GGUCC-UAUAcu----UGGgACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 97679 0.82 0.19668
Target:  5'- gCAGGAUGUGAuacucgcgguCgCUGCCGCCGCCGc -3'
miRNA:   3'- gGUCCUAUACUu---------GgGACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 65632 0.79 0.319725
Target:  5'- aCCAGGAggaccugacGGACCCgcUGCCGCUGCCGc -3'
miRNA:   3'- -GGUCCUaua------CUUGGG--ACGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 115180 0.77 0.37191
Target:  5'- gCCAGGAUGgcccUGGAUCCggccgugGCCGCCGCg- -3'
miRNA:   3'- -GGUCCUAU----ACUUGGGa------CGGCGGCGgu -5'
16227 5' -57 NC_004065.1 + 86683 0.75 0.464841
Target:  5'- cCCAGuGUucccucGCCCUGCCGCCGCCc -3'
miRNA:   3'- -GGUCcUAuacu--UGGGACGGCGGCGGu -5'
16227 5' -57 NC_004065.1 + 114251 0.75 0.473885
Target:  5'- cCCGGGAccgccAACCCUGCCGCCuCCGc -3'
miRNA:   3'- -GGUCCUauac-UUGGGACGGCGGcGGU- -5'
16227 5' -57 NC_004065.1 + 149685 0.75 0.492231
Target:  5'- uCCAGGGUcugcagGUGAACgCCgggggGCCGCgGCCGc -3'
miRNA:   3'- -GGUCCUA------UACUUG-GGa----CGGCGgCGGU- -5'
16227 5' -57 NC_004065.1 + 6110 0.73 0.578253
Target:  5'- aCGGaGAUGgagGAACCaucacGCCGCCGCCGc -3'
miRNA:   3'- gGUC-CUAUa--CUUGGga---CGGCGGCGGU- -5'
16227 5' -57 NC_004065.1 + 69028 0.72 0.676899
Target:  5'- aUCAcGGAUAgcagcagcAGCCC-GCCGCCGCCGg -3'
miRNA:   3'- -GGU-CCUAUac------UUGGGaCGGCGGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.