miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16228 3' -51 NC_004065.1 + 64374 0.66 0.998852
Target:  5'- cGCGUCCuGCAGgc--UCUgUCCGAGCa -3'
miRNA:   3'- -UGCAGGcUGUCaucaGGAaAGGCUUG- -5'
16228 3' -51 NC_004065.1 + 194418 0.66 0.998342
Target:  5'- gGCGuUCCaGACGG-AGUUCUccCCGGGCg -3'
miRNA:   3'- -UGC-AGG-CUGUCaUCAGGAaaGGCUUG- -5'
16228 3' -51 NC_004065.1 + 214501 0.66 0.998342
Target:  5'- cGCGUCCcgaAGUGGcauUCCUcaCCGAGCc -3'
miRNA:   3'- -UGCAGGcugUCAUC---AGGAaaGGCUUG- -5'
16228 3' -51 NC_004065.1 + 213428 0.66 0.998342
Target:  5'- cGCGUCCGcaGCGGUAGagguaucgggcUCCguagUCuCGGGCu -3'
miRNA:   3'- -UGCAGGC--UGUCAUC-----------AGGaa--AG-GCUUG- -5'
16228 3' -51 NC_004065.1 + 195445 0.66 0.998342
Target:  5'- uCGUCgGACA--GGUCCgagUCCGAc- -3'
miRNA:   3'- uGCAGgCUGUcaUCAGGaa-AGGCUug -5'
16228 3' -51 NC_004065.1 + 66810 0.67 0.996739
Target:  5'- gACGUCCGAgGGacgcGUCCguugaUUUCCGGuACg -3'
miRNA:   3'- -UGCAGGCUgUCau--CAGG-----AAAGGCU-UG- -5'
16228 3' -51 NC_004065.1 + 166155 0.67 0.996739
Target:  5'- gACGUgCGGguGgUGGUCC-UUCgCGAACg -3'
miRNA:   3'- -UGCAgGCUguC-AUCAGGaAAG-GCUUG- -5'
16228 3' -51 NC_004065.1 + 211816 0.67 0.995549
Target:  5'- gAUGUCCGuguAGUAGUCCg---CGGACa -3'
miRNA:   3'- -UGCAGGCug-UCAUCAGGaaagGCUUG- -5'
16228 3' -51 NC_004065.1 + 87137 0.7 0.97434
Target:  5'- -aGUCCGACAGUgaguAGaUCCgaUCCGGGa -3'
miRNA:   3'- ugCAGGCUGUCA----UC-AGGaaAGGCUUg -5'
16228 3' -51 NC_004065.1 + 53446 0.7 0.971618
Target:  5'- cCGaCCGACGGUGGUCgUgcCCGAGa -3'
miRNA:   3'- uGCaGGCUGUCAUCAGgAaaGGCUUg -5'
16228 3' -51 NC_004065.1 + 124812 0.71 0.962213
Target:  5'- gACGUCCGcCGGgcGUCCa---CGAACa -3'
miRNA:   3'- -UGCAGGCuGUCauCAGGaaagGCUUG- -5'
16228 3' -51 NC_004065.1 + 28703 0.71 0.950836
Target:  5'- cACGUcCCGGCAGggcggAGaUCCUgUCCGAGg -3'
miRNA:   3'- -UGCA-GGCUGUCa----UC-AGGAaAGGCUUg -5'
16228 3' -51 NC_004065.1 + 21504 0.73 0.897584
Target:  5'- cACGUCUgucgugauGGCGGUGGUCCgugUgCGAACg -3'
miRNA:   3'- -UGCAGG--------CUGUCAUCAGGaa-AgGCUUG- -5'
16228 3' -51 NC_004065.1 + 109656 0.74 0.877007
Target:  5'- cGCGacUCCGGCAG-GGUCC--UCCGGGCg -3'
miRNA:   3'- -UGC--AGGCUGUCaUCAGGaaAGGCUUG- -5'
16228 3' -51 NC_004065.1 + 222669 1.11 0.01095
Target:  5'- cACGUCCGACAGUAGUCCUUUCCGAACg -3'
miRNA:   3'- -UGCAGGCUGUCAUCAGGAAAGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.