Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16228 | 5' | -57.6 | NC_004065.1 | + | 118181 | 0.68 | 0.880687 |
Target: 5'- cCGUCaCGGcUGCCGCCG-UUCGGUUGg -3' miRNA: 3'- cGCAG-GCC-AUGGUGGCcGAGCUAGCa -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 174701 | 0.68 | 0.866894 |
Target: 5'- cGUGUCCGuuuCCGCCG-CUCGGUCu- -3' miRNA: 3'- -CGCAGGCcauGGUGGCcGAGCUAGca -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 102137 | 0.68 | 0.880687 |
Target: 5'- uGCGUgCGGagGCagacCCGGCUCGAcCGUc -3' miRNA: 3'- -CGCAgGCCa-UGgu--GGCCGAGCUaGCA- -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 53236 | 0.68 | 0.880687 |
Target: 5'- -gGUCCaacgcgcuCCGCCGGCgCGAUCGUg -3' miRNA: 3'- cgCAGGccau----GGUGGCCGaGCUAGCA- -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 31078 | 0.69 | 0.796063 |
Target: 5'- cGCGgCUGGUgGCCACgGGCggCGAUCa- -3' miRNA: 3'- -CGCaGGCCA-UGGUGgCCGa-GCUAGca -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 168628 | 0.69 | 0.829176 |
Target: 5'- gGCG-CUGGUGCCgcgggcggaGCCGGCgcggCGAcgUCGUc -3' miRNA: 3'- -CGCaGGCCAUGG---------UGGCCGa---GCU--AGCA- -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 98004 | 0.69 | 0.829176 |
Target: 5'- uCGUCgUGGgucaccACCGCCGGCgcguggCGGUCGUu -3' miRNA: 3'- cGCAG-GCCa-----UGGUGGCCGa-----GCUAGCA- -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 41413 | 0.69 | 0.820309 |
Target: 5'- cGCGgaaguucUCCGGcgACgACCGGCUCGAgauggaCGUc -3' miRNA: 3'- -CGC-------AGGCCa-UGgUGGCCGAGCUa-----GCA- -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 184187 | 0.69 | 0.812915 |
Target: 5'- cGCGUCCcGUGCgGCCGGUcCGAUa-- -3' miRNA: 3'- -CGCAGGcCAUGgUGGCCGaGCUAgca -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 109868 | 0.7 | 0.751731 |
Target: 5'- cCGggCGGUGCCACCGGCgUCGccgCGg -3' miRNA: 3'- cGCagGCCAUGGUGGCCG-AGCua-GCa -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 127137 | 0.7 | 0.787433 |
Target: 5'- gGCGg-CGGcGCUACCGGCggcggCGAUCGc -3' miRNA: 3'- -CGCagGCCaUGGUGGCCGa----GCUAGCa -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 65468 | 0.71 | 0.705028 |
Target: 5'- aGCGgUCGGcgccGCCGCCGGCUCGAcacagCGa -3' miRNA: 3'- -CGCaGGCCa---UGGUGGCCGAGCUa----GCa -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 157949 | 0.72 | 0.685903 |
Target: 5'- cGCG-CagGGUGgcguCCACCGGCUgGGUCGUg -3' miRNA: 3'- -CGCaGg-CCAU----GGUGGCCGAgCUAGCA- -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 39936 | 0.72 | 0.676277 |
Target: 5'- cGCGauccUCCGGUGCCG-CGGCUCauuGUCGg -3' miRNA: 3'- -CGC----AGGCCAUGGUgGCCGAGc--UAGCa -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 114867 | 0.72 | 0.676277 |
Target: 5'- gGCGacgaCGGUGCCGCCGGC-CGG-CGg -3' miRNA: 3'- -CGCag--GCCAUGGUGGCCGaGCUaGCa -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 151219 | 0.72 | 0.676277 |
Target: 5'- ---aCCGGUACCGCCGGCgcggggaagaccUCGAgCGUc -3' miRNA: 3'- cgcaGGCCAUGGUGGCCG------------AGCUaGCA- -5' |
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16228 | 5' | -57.6 | NC_004065.1 | + | 222704 | 1.09 | 0.004055 |
Target: 5'- cGCGUCCGGUACCACCGGCUCGAUCGUc -3' miRNA: 3'- -CGCAGGCCAUGGUGGCCGAGCUAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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