miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16228 5' -57.6 NC_004065.1 + 63879 0.68 0.866894
Target:  5'- gGCG-CCGcUGCCGCCGGCgcCGA-CGUc -3'
miRNA:   3'- -CGCaGGCcAUGGUGGCCGa-GCUaGCA- -5'
16228 5' -57.6 NC_004065.1 + 97935 0.68 0.866894
Target:  5'- cGCGUCCGG---CACCGGCguggcagCGGUgGg -3'
miRNA:   3'- -CGCAGGCCaugGUGGCCGa------GCUAgCa -5'
16228 5' -57.6 NC_004065.1 + 45163 0.68 0.85234
Target:  5'- gGCGUCCc--GCCGCCcGCUCGAcUCGa -3'
miRNA:   3'- -CGCAGGccaUGGUGGcCGAGCU-AGCa -5'
16228 5' -57.6 NC_004065.1 + 11975 0.68 0.844791
Target:  5'- -gGUCCGGUGauGCUGGUggccgCGAUCGUc -3'
miRNA:   3'- cgCAGGCCAUggUGGCCGa----GCUAGCA- -5'
16228 5' -57.6 NC_004065.1 + 98004 0.69 0.829176
Target:  5'- uCGUCgUGGgucaccACCGCCGGCgcguggCGGUCGUu -3'
miRNA:   3'- cGCAG-GCCa-----UGGUGGCCGa-----GCUAGCA- -5'
16228 5' -57.6 NC_004065.1 + 168628 0.69 0.829176
Target:  5'- gGCG-CUGGUGCCgcgggcggaGCCGGCgcggCGAcgUCGUc -3'
miRNA:   3'- -CGCaGGCCAUGG---------UGGCCGa---GCU--AGCA- -5'
16228 5' -57.6 NC_004065.1 + 41413 0.69 0.820309
Target:  5'- cGCGgaaguucUCCGGcgACgACCGGCUCGAgauggaCGUc -3'
miRNA:   3'- -CGC-------AGGCCa-UGgUGGCCGAGCUa-----GCA- -5'
16228 5' -57.6 NC_004065.1 + 184187 0.69 0.812915
Target:  5'- cGCGUCCcGUGCgGCCGGUcCGAUa-- -3'
miRNA:   3'- -CGCAGGcCAUGgUGGCCGaGCUAgca -5'
16228 5' -57.6 NC_004065.1 + 31078 0.69 0.796063
Target:  5'- cGCGgCUGGUgGCCACgGGCggCGAUCa- -3'
miRNA:   3'- -CGCaGGCCA-UGGUGgCCGa-GCUAGca -5'
16228 5' -57.6 NC_004065.1 + 127137 0.7 0.787433
Target:  5'- gGCGg-CGGcGCUACCGGCggcggCGAUCGc -3'
miRNA:   3'- -CGCagGCCaUGGUGGCCGa----GCUAGCa -5'
16228 5' -57.6 NC_004065.1 + 109868 0.7 0.751731
Target:  5'- cCGggCGGUGCCACCGGCgUCGccgCGg -3'
miRNA:   3'- cGCagGCCAUGGUGGCCG-AGCua-GCa -5'
16228 5' -57.6 NC_004065.1 + 65468 0.71 0.705028
Target:  5'- aGCGgUCGGcgccGCCGCCGGCUCGAcacagCGa -3'
miRNA:   3'- -CGCaGGCCa---UGGUGGCCGAGCUa----GCa -5'
16228 5' -57.6 NC_004065.1 + 157949 0.72 0.685903
Target:  5'- cGCG-CagGGUGgcguCCACCGGCUgGGUCGUg -3'
miRNA:   3'- -CGCaGg-CCAU----GGUGGCCGAgCUAGCA- -5'
16228 5' -57.6 NC_004065.1 + 39936 0.72 0.676277
Target:  5'- cGCGauccUCCGGUGCCG-CGGCUCauuGUCGg -3'
miRNA:   3'- -CGC----AGGCCAUGGUgGCCGAGc--UAGCa -5'
16228 5' -57.6 NC_004065.1 + 114867 0.72 0.676277
Target:  5'- gGCGacgaCGGUGCCGCCGGC-CGG-CGg -3'
miRNA:   3'- -CGCag--GCCAUGGUGGCCGaGCUaGCa -5'
16228 5' -57.6 NC_004065.1 + 151219 0.72 0.676277
Target:  5'- ---aCCGGUACCGCCGGCgcggggaagaccUCGAgCGUc -3'
miRNA:   3'- cgcaGGCCAUGGUGGCCG------------AGCUaGCA- -5'
16228 5' -57.6 NC_004065.1 + 222704 1.09 0.004055
Target:  5'- cGCGUCCGGUACCACCGGCUCGAUCGUc -3'
miRNA:   3'- -CGCAGGCCAUGGUGGCCGAGCUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.