miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16228 5' -57.6 NC_004065.1 + 114867 0.72 0.676277
Target:  5'- gGCGacgaCGGUGCCGCCGGC-CGG-CGg -3'
miRNA:   3'- -CGCag--GCCAUGGUGGCCGaGCUaGCa -5'
16228 5' -57.6 NC_004065.1 + 115888 0.66 0.93256
Target:  5'- cGCGUCUaaUACuCugCGGCUCGGggccgUCGUc -3'
miRNA:   3'- -CGCAGGccAUG-GugGCCGAGCU-----AGCA- -5'
16228 5' -57.6 NC_004065.1 + 118181 0.68 0.880687
Target:  5'- cCGUCaCGGcUGCCGCCG-UUCGGUUGg -3'
miRNA:   3'- cGCAG-GCC-AUGGUGGCcGAGCUAGCa -5'
16228 5' -57.6 NC_004065.1 + 124216 0.66 0.941737
Target:  5'- gGCGUgCGGUGCCAgUGGUgguacUCGUg -3'
miRNA:   3'- -CGCAgGCCAUGGUgGCCGagcu-AGCA- -5'
16228 5' -57.6 NC_004065.1 + 127137 0.7 0.787433
Target:  5'- gGCGg-CGGcGCUACCGGCggcggCGAUCGc -3'
miRNA:   3'- -CGCagGCCaUGGUGGCCGa----GCUAGCa -5'
16228 5' -57.6 NC_004065.1 + 140711 0.66 0.927649
Target:  5'- cGCGUCCucagaacucGCUGCCGcGCUCGGUCa- -3'
miRNA:   3'- -CGCAGGcca------UGGUGGC-CGAGCUAGca -5'
16228 5' -57.6 NC_004065.1 + 151219 0.72 0.676277
Target:  5'- ---aCCGGUACCGCCGGCgcggggaagaccUCGAgCGUc -3'
miRNA:   3'- cgcaGGCCAUGGUGGCCG------------AGCUaGCA- -5'
16228 5' -57.6 NC_004065.1 + 157949 0.72 0.685903
Target:  5'- cGCG-CagGGUGgcguCCACCGGCUgGGUCGUg -3'
miRNA:   3'- -CGCaGg-CCAU----GGUGGCCGAgCUAGCA- -5'
16228 5' -57.6 NC_004065.1 + 164453 0.66 0.931109
Target:  5'- cGCGUCgCGGUAcagguacucgcgacCCGCCGGCgacgCGcccagCGUc -3'
miRNA:   3'- -CGCAG-GCCAU--------------GGUGGCCGa---GCua---GCA- -5'
16228 5' -57.6 NC_004065.1 + 168628 0.69 0.829176
Target:  5'- gGCG-CUGGUGCCgcgggcggaGCCGGCgcggCGAcgUCGUc -3'
miRNA:   3'- -CGCaGGCCAUGG---------UGGCCGa---GCU--AGCA- -5'
16228 5' -57.6 NC_004065.1 + 174701 0.68 0.866894
Target:  5'- cGUGUCCGuuuCCGCCG-CUCGGUCu- -3'
miRNA:   3'- -CGCAGGCcauGGUGGCcGAGCUAGca -5'
16228 5' -57.6 NC_004065.1 + 184187 0.69 0.812915
Target:  5'- cGCGUCCcGUGCgGCCGGUcCGAUa-- -3'
miRNA:   3'- -CGCAGGcCAUGgUGGCCGaGCUAgca -5'
16228 5' -57.6 NC_004065.1 + 197474 0.66 0.941737
Target:  5'- uUGUCggCGGaUACCGCCGGCgCGA-CGg -3'
miRNA:   3'- cGCAG--GCC-AUGGUGGCCGaGCUaGCa -5'
16228 5' -57.6 NC_004065.1 + 202742 0.67 0.887286
Target:  5'- cGCGUCgucggCGGcGCCGCCGGuCUCu-UCGUc -3'
miRNA:   3'- -CGCAG-----GCCaUGGUGGCC-GAGcuAGCA- -5'
16228 5' -57.6 NC_004065.1 + 209345 0.66 0.927649
Target:  5'- cUGcCCGGUGCCAgCGGCgUGGUgGa -3'
miRNA:   3'- cGCaGGCCAUGGUgGCCGaGCUAgCa -5'
16228 5' -57.6 NC_004065.1 + 222704 1.09 0.004055
Target:  5'- cGCGUCCGGUACCACCGGCUCGAUCGUc -3'
miRNA:   3'- -CGCAGGCCAUGGUGGCCGAGCUAGCA- -5'
16228 5' -57.6 NC_004065.1 + 223994 0.66 0.941737
Target:  5'- cGUGUCCGG-ACCGCUGuaaucugggaGUUUGAUCa- -3'
miRNA:   3'- -CGCAGGCCaUGGUGGC----------CGAGCUAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.