Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16229 | 3' | -60.5 | NC_004065.1 | + | 25490 | 0.66 | 0.822573 |
Target: 5'- cGCCCGAcGAGgCGUcuGGCGaCCACGa -3' miRNA: 3'- -CGGGCUcUUCgGCGauCCGCcGGUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 116306 | 0.66 | 0.822573 |
Target: 5'- cUCCGAGguGUCgGCgucGGCGGCgGCAg -3' miRNA: 3'- cGGGCUCuuCGG-CGau-CCGCCGgUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 156279 | 0.66 | 0.822573 |
Target: 5'- gGCCuCGGGAGGCgGgaGuagcGGCGGCaGCAg -3' miRNA: 3'- -CGG-GCUCUUCGgCgaU----CCGCCGgUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 208249 | 0.66 | 0.822573 |
Target: 5'- -aCCGAGGAGCCGaCggaacGCGGUCAg- -3' miRNA: 3'- cgGGCUCUUCGGC-Gauc--CGCCGGUgu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 74150 | 0.66 | 0.822573 |
Target: 5'- uGCCCGGGccGAGaaccCCGC-AGGCGGCg--- -3' miRNA: 3'- -CGGGCUC--UUC----GGCGaUCCGCCGgugu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 122658 | 0.66 | 0.814398 |
Target: 5'- uCCCGAGAagacgGGCgGCaGGGUGGUgagCACGu -3' miRNA: 3'- cGGGCUCU-----UCGgCGaUCCGCCG---GUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 176548 | 0.66 | 0.814398 |
Target: 5'- cGCCCGAGAacGGagGCU-GGUGaGCCAUc -3' miRNA: 3'- -CGGGCUCU--UCggCGAuCCGC-CGGUGu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 115188 | 0.66 | 0.814398 |
Target: 5'- gGCCCuGGAuccGGCCGU--GGCcGCCGCGa -3' miRNA: 3'- -CGGGcUCU---UCGGCGauCCGcCGGUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 63112 | 0.66 | 0.814398 |
Target: 5'- -gCCGAGAcAGCCGgUGGaCGGCC-CGu -3' miRNA: 3'- cgGGCUCU-UCGGCgAUCcGCCGGuGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 115327 | 0.66 | 0.814398 |
Target: 5'- cCCCuguaGAGggGCUGCUgcugAGGCGGgCGa- -3' miRNA: 3'- cGGG----CUCuuCGGCGA----UCCGCCgGUgu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 104602 | 0.66 | 0.814398 |
Target: 5'- uGCCCGAGG---CGCUGGcGCcGGCCGa- -3' miRNA: 3'- -CGGGCUCUucgGCGAUC-CG-CCGGUgu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 116813 | 0.66 | 0.814398 |
Target: 5'- aUCaCGAcGAAGCUGCUgucgGGGCaGCCGCu -3' miRNA: 3'- cGG-GCU-CUUCGGCGA----UCCGcCGGUGu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 119809 | 0.66 | 0.813573 |
Target: 5'- cGCCgGcGAAGCC-CUcuucccucucgacGGGCGGCgGCGc -3' miRNA: 3'- -CGGgCuCUUCGGcGA-------------UCCGCCGgUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 172235 | 0.66 | 0.809421 |
Target: 5'- gGCCCGGGGAucGaCCGaCUGaccaccgagagcgacGGCGGCgGCGa -3' miRNA: 3'- -CGGGCUCUU--C-GGC-GAU---------------CCGCCGgUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 29551 | 0.66 | 0.809421 |
Target: 5'- gGCCUGucGGcaucAGGCCGCgcucccgcuaucugAcGGCGGCCGCGg -3' miRNA: 3'- -CGGGC--UC----UUCGGCGa-------------U-CCGCCGGUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 83642 | 0.66 | 0.806075 |
Target: 5'- gGCCCGaAGAAGUCGaagacgGGGUagaGGCCGgAg -3' miRNA: 3'- -CGGGC-UCUUCGGCga----UCCG---CCGGUgU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 226627 | 0.66 | 0.806075 |
Target: 5'- aUCCGAGGAGCCGaac--CGuGCCACAc -3' miRNA: 3'- cGGGCUCUUCGGCgauccGC-CGGUGU- -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 69710 | 0.66 | 0.806075 |
Target: 5'- cGCUgGAGAGGCUGCUGaagacGGC-GCCGa- -3' miRNA: 3'- -CGGgCUCUUCGGCGAU-----CCGcCGGUgu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 126583 | 0.66 | 0.806075 |
Target: 5'- aGCUCGGGu--CCGCUGGaGCuGCCGCc -3' miRNA: 3'- -CGGGCUCuucGGCGAUC-CGcCGGUGu -5' |
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16229 | 3' | -60.5 | NC_004065.1 | + | 119322 | 0.66 | 0.806075 |
Target: 5'- cGgCCGAGucGCgGC--GGCGGCuCACGu -3' miRNA: 3'- -CgGGCUCuuCGgCGauCCGCCG-GUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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