miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 3' -60.5 NC_004065.1 + 32889 0.66 0.780281
Target:  5'- cGCCggCGAGcgucuGCCGCUGGGCaucccCCACAa -3'
miRNA:   3'- -CGG--GCUCuu---CGGCGAUCCGcc---GGUGU- -5'
16229 3' -60.5 NC_004065.1 + 146184 0.66 0.789009
Target:  5'- aGCUCGAGucgGGCCaGCUGGGCGaaaACAa -3'
miRNA:   3'- -CGGGCUCu--UCGG-CGAUCCGCcggUGU- -5'
16229 3' -60.5 NC_004065.1 + 169257 0.66 0.780281
Target:  5'- --gCGGGAGGCCGCggcccuGuGCGGCCuCGa -3'
miRNA:   3'- cggGCUCUUCGGCGau----C-CGCCGGuGU- -5'
16229 3' -60.5 NC_004065.1 + 122658 0.66 0.814398
Target:  5'- uCCCGAGAagacgGGCgGCaGGGUGGUgagCACGu -3'
miRNA:   3'- cGGGCUCU-----UCGgCGaUCCGCCG---GUGU- -5'
16229 3' -60.5 NC_004065.1 + 63473 0.66 0.797609
Target:  5'- aCCCGGuGcAGCCGCcAGGCGccGUCGCGc -3'
miRNA:   3'- cGGGCU-CuUCGGCGaUCCGC--CGGUGU- -5'
16229 3' -60.5 NC_004065.1 + 41319 0.66 0.797609
Target:  5'- aGCCUGAcGAAcCCGa-GGGUGGCCAUc -3'
miRNA:   3'- -CGGGCU-CUUcGGCgaUCCGCCGGUGu -5'
16229 3' -60.5 NC_004065.1 + 25490 0.66 0.822573
Target:  5'- cGCCCGAcGAGgCGUcuGGCGaCCACGa -3'
miRNA:   3'- -CGGGCUcUUCgGCGauCCGCcGGUGU- -5'
16229 3' -60.5 NC_004065.1 + 133595 0.66 0.780281
Target:  5'- cGCUCGAGGAGCguugcgagCGCgauuucgAGGCGGaCgACGa -3'
miRNA:   3'- -CGGGCUCUUCG--------GCGa------UCCGCC-GgUGU- -5'
16229 3' -60.5 NC_004065.1 + 208249 0.66 0.822573
Target:  5'- -aCCGAGGAGCCGaCggaacGCGGUCAg- -3'
miRNA:   3'- cgGGCUCUUCGGC-Gauc--CGCCGGUgu -5'
16229 3' -60.5 NC_004065.1 + 156279 0.66 0.822573
Target:  5'- gGCCuCGGGAGGCgGgaGuagcGGCGGCaGCAg -3'
miRNA:   3'- -CGG-GCUCUUCGgCgaU----CCGCCGgUGU- -5'
16229 3' -60.5 NC_004065.1 + 172241 0.66 0.797609
Target:  5'- uCCCGucacGAacGGCCcCUcguaAGGCGGCCACc -3'
miRNA:   3'- cGGGCu---CU--UCGGcGA----UCCGCCGGUGu -5'
16229 3' -60.5 NC_004065.1 + 59689 0.66 0.796755
Target:  5'- cGUCCGAGucGUCGUagaaGGGCgccgagcGGCCGCGg -3'
miRNA:   3'- -CGGGCUCuuCGGCGa---UCCG-------CCGGUGU- -5'
16229 3' -60.5 NC_004065.1 + 184913 0.66 0.789009
Target:  5'- cGCCCGGGuGGCUcg-GGaGCGGCCGgGa -3'
miRNA:   3'- -CGGGCUCuUCGGcgaUC-CGCCGGUgU- -5'
16229 3' -60.5 NC_004065.1 + 176548 0.66 0.814398
Target:  5'- cGCCCGAGAacGGagGCU-GGUGaGCCAUc -3'
miRNA:   3'- -CGGGCUCU--UCggCGAuCCGC-CGGUGu -5'
16229 3' -60.5 NC_004065.1 + 74150 0.66 0.822573
Target:  5'- uGCCCGGGccGAGaaccCCGC-AGGCGGCg--- -3'
miRNA:   3'- -CGGGCUC--UUC----GGCGaUCCGCCGgugu -5'
16229 3' -60.5 NC_004065.1 + 115188 0.66 0.814398
Target:  5'- gGCCCuGGAuccGGCCGU--GGCcGCCGCGa -3'
miRNA:   3'- -CGGGcUCU---UCGGCGauCCGcCGGUGU- -5'
16229 3' -60.5 NC_004065.1 + 63112 0.66 0.814398
Target:  5'- -gCCGAGAcAGCCGgUGGaCGGCC-CGu -3'
miRNA:   3'- cgGGCUCU-UCGGCgAUCcGCCGGuGU- -5'
16229 3' -60.5 NC_004065.1 + 194445 0.66 0.797609
Target:  5'- cGCCuCGGucGAAGCgGUUGGGCacGGCgGCGc -3'
miRNA:   3'- -CGG-GCU--CUUCGgCGAUCCG--CCGgUGU- -5'
16229 3' -60.5 NC_004065.1 + 226627 0.66 0.806075
Target:  5'- aUCCGAGGAGCCGaac--CGuGCCACAc -3'
miRNA:   3'- cGGGCUCUUCGGCgauccGC-CGGUGU- -5'
16229 3' -60.5 NC_004065.1 + 69710 0.66 0.806075
Target:  5'- cGCUgGAGAGGCUGCUGaagacGGC-GCCGa- -3'
miRNA:   3'- -CGGgCUCUUCGGCGAU-----CCGcCGGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.