miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 44536 0.66 0.976146
Target:  5'- -cCGggGACGGUgGCGgcgCUGCC-UCCCg -3'
miRNA:   3'- caGUaaCUGUCG-CGCa--GGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 153223 0.66 0.975411
Target:  5'- -----cGACGGCgaugaacggugauaGCGUUCGCCGUCgCg -3'
miRNA:   3'- caguaaCUGUCG--------------CGCAGGCGGUAGgG- -5'
16229 5' -55.1 NC_004065.1 + 169108 0.66 0.973631
Target:  5'- -aCGUccUGACAGaCGCGggccgCgGCCAgcaguUCCCg -3'
miRNA:   3'- caGUA--ACUGUC-GCGCa----GgCGGU-----AGGG- -5'
16229 5' -55.1 NC_004065.1 + 32260 0.66 0.973631
Target:  5'- aUCAUcgGACGGCuccgaGUGcCCGCUGUCCg -3'
miRNA:   3'- cAGUAa-CUGUCG-----CGCaGGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 154613 0.66 0.970928
Target:  5'- gGUCAUccGugAGCucuucggggGCGUCUGCCAgcaCCg -3'
miRNA:   3'- -CAGUAa-CugUCG---------CGCAGGCGGUag-GG- -5'
16229 5' -55.1 NC_004065.1 + 137486 0.66 0.970928
Target:  5'- -gCGU--GC-GCGCGcCCGCCcgCCCg -3'
miRNA:   3'- caGUAacUGuCGCGCaGGCGGuaGGG- -5'
16229 5' -55.1 NC_004065.1 + 46001 0.66 0.970928
Target:  5'- -gCcgUGGCGGCGUugaacucggGUCUGCCGauggCCCc -3'
miRNA:   3'- caGuaACUGUCGCG---------CAGGCGGUa---GGG- -5'
16229 5' -55.1 NC_004065.1 + 222956 0.66 0.970928
Target:  5'- uUCg--GGCAGCGCGaaCGaCCAgcUCCCg -3'
miRNA:   3'- cAGuaaCUGUCGCGCagGC-GGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 196063 0.66 0.970928
Target:  5'- cGUCGgggcccgUGAUGuccaucGCGUGUCCGUCGaaUCCCc -3'
miRNA:   3'- -CAGUa------ACUGU------CGCGCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 138845 0.66 0.970928
Target:  5'- -----cGACGGCGCuUCCgcgGCCGUCgCCu -3'
miRNA:   3'- caguaaCUGUCGCGcAGG---CGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 229678 0.66 0.970928
Target:  5'- cGUCgg-GGC-GCGCGUCCGCUcggcgAUCUa -3'
miRNA:   3'- -CAGuaaCUGuCGCGCAGGCGG-----UAGGg -5'
16229 5' -55.1 NC_004065.1 + 6920 0.66 0.970928
Target:  5'- uUCAgcugcggGcACGGCcucgGCGUCCGCCGUCg- -3'
miRNA:   3'- cAGUaa-----C-UGUCG----CGCAGGCGGUAGgg -5'
16229 5' -55.1 NC_004065.1 + 15907 0.66 0.970928
Target:  5'- uUUAUUGuCGGCGCGUgCGaCCggCCg -3'
miRNA:   3'- cAGUAACuGUCGCGCAgGC-GGuaGGg -5'
16229 5' -55.1 NC_004065.1 + 172971 0.66 0.968032
Target:  5'- -aCGUUGACGGgGCcuuGcCCGUCGUgCCg -3'
miRNA:   3'- caGUAACUGUCgCG---CaGGCGGUAgGG- -5'
16229 5' -55.1 NC_004065.1 + 84044 0.66 0.968032
Target:  5'- -----aGACGGCGU--CCGCCAUCUg -3'
miRNA:   3'- caguaaCUGUCGCGcaGGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 139879 0.66 0.964938
Target:  5'- gGUCcgUGACGGUG-GUCCGggugagggugauCgCAUCCCc -3'
miRNA:   3'- -CAGuaACUGUCGCgCAGGC------------G-GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 205343 0.66 0.964938
Target:  5'- uUCAUcGGCAGCGuCGUC-GCC-UCCg -3'
miRNA:   3'- cAGUAaCUGUCGC-GCAGgCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 37210 0.66 0.961639
Target:  5'- cUCAagcGCAGCGCccagacgCCGCCGUCuCCa -3'
miRNA:   3'- cAGUaacUGUCGCGca-----GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 168448 0.66 0.961639
Target:  5'- cGUCGa-GACGGCGUccaagaGgaaCGCCGUCCCc -3'
miRNA:   3'- -CAGUaaCUGUCGCG------Cag-GCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 2550 0.66 0.961639
Target:  5'- aUCGgucGACGGC-CGUCCGUCuUCCg -3'
miRNA:   3'- cAGUaa-CUGUCGcGCAGGCGGuAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.