Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 37159 | 0.67 | 0.941926 |
Target: 5'- aUCGgcGGCAGCaGUGUcagcaacuccgCCGCCGUCaCCg -3' miRNA: 3'- cAGUaaCUGUCG-CGCA-----------GGCGGUAG-GG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 57907 | 0.67 | 0.94631 |
Target: 5'- uGUCGUUGAagUAGCcaccGCGgucagagCCGCC-UCCCc -3' miRNA: 3'- -CAGUAACU--GUCG----CGCa------GGCGGuAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 194267 | 0.67 | 0.94631 |
Target: 5'- -aCGUUcGACAGgGCca-CGCCGUCCUg -3' miRNA: 3'- caGUAA-CUGUCgCGcagGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 31058 | 0.67 | 0.95047 |
Target: 5'- aGUCuGUUGACGGCGUa--CGCCuUCCUc -3' miRNA: 3'- -CAG-UAACUGUCGCGcagGCGGuAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 39980 | 0.67 | 0.95047 |
Target: 5'- -cCGUUGACGGUGUcuguacaccgCCGCCAacgcuauuacuUCCCg -3' miRNA: 3'- caGUAACUGUCGCGca--------GGCGGU-----------AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 50334 | 0.67 | 0.95047 |
Target: 5'- ----gUGGCAcGCGUGgccaccgCCGCgAUCCCg -3' miRNA: 3'- caguaACUGU-CGCGCa------GGCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 76675 | 0.67 | 0.954409 |
Target: 5'- -----gGAUcGCGuCGgcgCCGCCGUCCCc -3' miRNA: 3'- caguaaCUGuCGC-GCa--GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 109899 | 0.67 | 0.940567 |
Target: 5'- cGUCGggGGguccCGGCuCGUCCGCCgcggccgccgucgcGUCCCg -3' miRNA: 3'- -CAGUaaCU----GUCGcGCAGGCGG--------------UAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 112991 | 0.67 | 0.94631 |
Target: 5'- cUUcgUGACGGCGU--UCGCgAUCCCc -3' miRNA: 3'- cAGuaACUGUCGCGcaGGCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 101608 | 0.67 | 0.941926 |
Target: 5'- cUCggUGGCGGCGcCG-CCGCCGcUgCCg -3' miRNA: 3'- cAGuaACUGUCGC-GCaGGCGGU-AgGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 153497 | 0.67 | 0.95047 |
Target: 5'- -----cGACAgGUGCGaacacgCCGCCGUCCUc -3' miRNA: 3'- caguaaCUGU-CGCGCa-----GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 120879 | 0.67 | 0.954409 |
Target: 5'- cGUUGUcGACGGaacCGcCGUcacCCGCCGUCCCc -3' miRNA: 3'- -CAGUAaCUGUC---GC-GCA---GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 212134 | 0.67 | 0.95047 |
Target: 5'- aGUCucucGACGG-GCGUCCGUCcgCCg -3' miRNA: 3'- -CAGuaa-CUGUCgCGCAGGCGGuaGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 52046 | 0.68 | 0.924267 |
Target: 5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3' miRNA: 3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 137972 | 0.68 | 0.927415 |
Target: 5'- cUCGUUG-CA-CGCGUUCGUCAggCCCa -3' miRNA: 3'- cAGUAACuGUcGCGCAGGCGGUa-GGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 128427 | 0.68 | 0.922122 |
Target: 5'- uUCAUaugcGAC-GCGCG-CCGCCucUCCCu -3' miRNA: 3'- cAGUAa---CUGuCGCGCaGGCGGu-AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 186681 | 0.68 | 0.9166 |
Target: 5'- uGUCGggGACgcGGCGCGUggggcguccCCGCCGggCCa -3' miRNA: 3'- -CAGUaaCUG--UCGCGCA---------GGCGGUagGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 107109 | 0.68 | 0.922122 |
Target: 5'- uGUCGcggcUGAuCGGCGCGgugaUCC-CCAUCCCc -3' miRNA: 3'- -CAGUa---ACU-GUCGCGC----AGGcGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 161326 | 0.68 | 0.927415 |
Target: 5'- uUCGUcGACAGCaGC-UCCGUCAUCUUc -3' miRNA: 3'- cAGUAaCUGUCG-CGcAGGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 133730 | 0.68 | 0.910263 |
Target: 5'- aGUCGUgugGACGGCGUccgugacgccccuGgccgccCCGCCGUCCa -3' miRNA: 3'- -CAGUAa--CUGUCGCG-------------Ca-----GGCGGUAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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