miRNA display CGI


Results 41 - 60 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 52046 0.68 0.924267
Target:  5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3'
miRNA:   3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5'
16229 5' -55.1 NC_004065.1 + 119388 0.68 0.9166
Target:  5'- aUCGUUGGCccAGCGCaccuuGUggaCCGUCAUCCUg -3'
miRNA:   3'- cAGUAACUG--UCGCG-----CA---GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 128427 0.68 0.922122
Target:  5'- uUCAUaugcGAC-GCGCG-CCGCCucUCCCu -3'
miRNA:   3'- cAGUAa---CUGuCGCGCaGGCGGu-AGGG- -5'
16229 5' -55.1 NC_004065.1 + 107109 0.68 0.922122
Target:  5'- uGUCGcggcUGAuCGGCGCGgugaUCC-CCAUCCCc -3'
miRNA:   3'- -CAGUa---ACU-GUCGCGC----AGGcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 133730 0.68 0.910263
Target:  5'- aGUCGUgugGACGGCGUccgugacgccccuGgccgccCCGCCGUCCa -3'
miRNA:   3'- -CAGUAa--CUGUCGCG-------------Ca-----GGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 87527 0.69 0.88153
Target:  5'- uGUCGacgcGCAGCGCGUgccagacgggguuagCCGCCuGUCCCc -3'
miRNA:   3'- -CAGUaac-UGUCGCGCA---------------GGCGG-UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 164940 0.69 0.904875
Target:  5'- aGUCGUUGAacGCGUGUaucugUCGCgAUCCCc -3'
miRNA:   3'- -CAGUAACUguCGCGCA-----GGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 209088 0.69 0.878763
Target:  5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3'
miRNA:   3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 220512 0.69 0.878764
Target:  5'- -aCGU--ACAGUGCGUgCGgCGUCCCg -3'
miRNA:   3'- caGUAacUGUCGCGCAgGCgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 41850 0.69 0.885617
Target:  5'- --uGUUGACGGUGaCGaugCUGCCGUUCCu -3'
miRNA:   3'- cagUAACUGUCGC-GCa--GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 171958 0.69 0.904875
Target:  5'- uGUCAUUG-CAGCGCa--CGCaCGUCCa -3'
miRNA:   3'- -CAGUAACuGUCGCGcagGCG-GUAGGg -5'
16229 5' -55.1 NC_004065.1 + 169185 0.69 0.898676
Target:  5'- cUCGaUGugAGUGUucgCCGCCGUCCUc -3'
miRNA:   3'- cAGUaACugUCGCGca-GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 124257 0.69 0.898676
Target:  5'- -----cGACAGCGgGaagCCGCCGUCgCa -3'
miRNA:   3'- caguaaCUGUCGCgCa--GGCGGUAGgG- -5'
16229 5' -55.1 NC_004065.1 + 199313 0.69 0.892255
Target:  5'- cGUCGUU--CAaCGCGUCCGCCAcCUCg -3'
miRNA:   3'- -CAGUAAcuGUcGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 151590 0.69 0.885617
Target:  5'- cGUCAUcGACgAGUGCGg-CGUCAUCCUc -3'
miRNA:   3'- -CAGUAaCUG-UCGCGCagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 126884 0.69 0.885617
Target:  5'- gGUCGUggaacaUGAUcGCGUGagCCGCCGUCgCCa -3'
miRNA:   3'- -CAGUA------ACUGuCGCGCa-GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 64009 0.69 0.885617
Target:  5'- -aCggUGACGGCcucccGCGUCCGUCGuuUCCUg -3'
miRNA:   3'- caGuaACUGUCG-----CGCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 160204 0.69 0.878763
Target:  5'- cUCGU--ACAGuCGCuucauGUCCGCCGUCCUc -3'
miRNA:   3'- cAGUAacUGUC-GCG-----CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 185484 0.7 0.864432
Target:  5'- gGUCGggaGGCAGCGcCG-CCaCCGUCCCc -3'
miRNA:   3'- -CAGUaa-CUGUCGC-GCaGGcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 160905 0.7 0.8717
Target:  5'- ---cUUGuCGGCGCG-CCGCgCGUCCUg -3'
miRNA:   3'- caguAACuGUCGCGCaGGCG-GUAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.