miRNA display CGI


Results 61 - 80 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 50334 0.67 0.95047
Target:  5'- ----gUGGCAcGCGUGgccaccgCCGCgAUCCCg -3'
miRNA:   3'- caguaACUGU-CGCGCa------GGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 76675 0.67 0.954409
Target:  5'- -----gGAUcGCGuCGgcgCCGCCGUCCCc -3'
miRNA:   3'- caguaaCUGuCGC-GCa--GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 194267 0.67 0.94631
Target:  5'- -aCGUUcGACAGgGCca-CGCCGUCCUg -3'
miRNA:   3'- caGUAA-CUGUCgCGcagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 120879 0.67 0.954409
Target:  5'- cGUUGUcGACGGaacCGcCGUcacCCGCCGUCCCc -3'
miRNA:   3'- -CAGUAaCUGUC---GC-GCA---GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 153497 0.67 0.95047
Target:  5'- -----cGACAgGUGCGaacacgCCGCCGUCCUc -3'
miRNA:   3'- caguaaCUGU-CGCGCa-----GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 212134 0.67 0.95047
Target:  5'- aGUCucucGACGG-GCGUCCGUCcgCCg -3'
miRNA:   3'- -CAGuaa-CUGUCgCGCAGGCGGuaGGg -5'
16229 5' -55.1 NC_004065.1 + 112991 0.67 0.94631
Target:  5'- cUUcgUGACGGCGU--UCGCgAUCCCc -3'
miRNA:   3'- cAGuaACUGUCGCGcaGGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 2550 0.66 0.961639
Target:  5'- aUCGgucGACGGC-CGUCCGUCuUCCg -3'
miRNA:   3'- cAGUaa-CUGUCGcGCAGGCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 205343 0.66 0.964938
Target:  5'- uUCAUcGGCAGCGuCGUC-GCC-UCCg -3'
miRNA:   3'- cAGUAaCUGUCGC-GCAGgCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 84044 0.66 0.968032
Target:  5'- -----aGACGGCGU--CCGCCAUCUg -3'
miRNA:   3'- caguaaCUGUCGCGcaGGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 168448 0.66 0.961639
Target:  5'- cGUCGa-GACGGCGUccaagaGgaaCGCCGUCCCc -3'
miRNA:   3'- -CAGUaaCUGUCGCG------Cag-GCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 44536 0.66 0.976146
Target:  5'- -cCGggGACGGUgGCGgcgCUGCC-UCCCg -3'
miRNA:   3'- caGUaaCUGUCG-CGCa--GGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 196063 0.66 0.970928
Target:  5'- cGUCGgggcccgUGAUGuccaucGCGUGUCCGUCGaaUCCCc -3'
miRNA:   3'- -CAGUa------ACUGU------CGCGCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 32260 0.66 0.973631
Target:  5'- aUCAUcgGACGGCuccgaGUGcCCGCUGUCCg -3'
miRNA:   3'- cAGUAa-CUGUCG-----CGCaGGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 169108 0.66 0.973631
Target:  5'- -aCGUccUGACAGaCGCGggccgCgGCCAgcaguUCCCg -3'
miRNA:   3'- caGUA--ACUGUC-GCGCa----GgCGGU-----AGGG- -5'
16229 5' -55.1 NC_004065.1 + 229678 0.66 0.970928
Target:  5'- cGUCgg-GGC-GCGCGUCCGCUcggcgAUCUa -3'
miRNA:   3'- -CAGuaaCUGuCGCGCAGGCGG-----UAGGg -5'
16229 5' -55.1 NC_004065.1 + 222956 0.66 0.970928
Target:  5'- uUCg--GGCAGCGCGaaCGaCCAgcUCCCg -3'
miRNA:   3'- cAGuaaCUGUCGCGCagGC-GGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 46001 0.66 0.970928
Target:  5'- -gCcgUGGCGGCGUugaacucggGUCUGCCGauggCCCc -3'
miRNA:   3'- caGuaACUGUCGCG---------CAGGCGGUa---GGG- -5'
16229 5' -55.1 NC_004065.1 + 139879 0.66 0.964938
Target:  5'- gGUCcgUGACGGUG-GUCCGggugagggugauCgCAUCCCc -3'
miRNA:   3'- -CAGuaACUGUCGCgCAGGC------------G-GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 153223 0.66 0.975411
Target:  5'- -----cGACGGCgaugaacggugauaGCGUUCGCCGUCgCg -3'
miRNA:   3'- caguaaCUGUCG--------------CGCAGGCGGUAGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.