miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 222854 1.11 0.004038
Target:  5'- cGUCAUUGACAGCGCGUCCGCCAUCCCc -3'
miRNA:   3'- -CAGUAACUGUCGCGCAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 35012 0.8 0.345499
Target:  5'- cGUCGUUGGCGGCGCGUCgaaCAUCUCa -3'
miRNA:   3'- -CAGUAACUGUCGCGCAGgcgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 210518 0.77 0.480582
Target:  5'- -cCGUUcGGCAGCGguUCCGCCGUCCCc -3'
miRNA:   3'- caGUAA-CUGUCGCgcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 64643 0.77 0.480583
Target:  5'- -cCAUcGACcGCGCGUCCGCCGUgCUg -3'
miRNA:   3'- caGUAaCUGuCGCGCAGGCGGUAgGG- -5'
16229 5' -55.1 NC_004065.1 + 163384 0.77 0.486151
Target:  5'- aUCAgcGuCAGCGCGUCCGCCAcgcagcgccgcagCCCg -3'
miRNA:   3'- cAGUaaCuGUCGCGCAGGCGGUa------------GGG- -5'
16229 5' -55.1 NC_004065.1 + 150638 0.77 0.489881
Target:  5'- aUCGUgUGuuuCAGCGCGUCCGCCcagAUCUCg -3'
miRNA:   3'- cAGUA-ACu--GUCGCGCAGGCGG---UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 99366 0.76 0.537535
Target:  5'- -gCGUUGGCAGCGaCGgcgCCGaCUGUCCCg -3'
miRNA:   3'- caGUAACUGUCGC-GCa--GGC-GGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 116107 0.75 0.6166
Target:  5'- cGUCGUcGACAcGCGCGaucUCCGCCcUCUCg -3'
miRNA:   3'- -CAGUAaCUGU-CGCGC---AGGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 139240 0.74 0.646614
Target:  5'- cGUCcugccggGACAGCGCGU-CGCC-UCCCu -3'
miRNA:   3'- -CAGuaa----CUGUCGCGCAgGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 72301 0.74 0.666581
Target:  5'- -aCGUUGACAucGcCGCGaCCGCgGUCCCg -3'
miRNA:   3'- caGUAACUGU--C-GCGCaGGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 199932 0.73 0.714915
Target:  5'- cGUCccUGACAcaucagcGCGCGcUCCGCCAcggcggUCCCg -3'
miRNA:   3'- -CAGuaACUGU-------CGCGC-AGGCGGU------AGGG- -5'
16229 5' -55.1 NC_004065.1 + 164386 0.73 0.715888
Target:  5'- -gCAgcGGCAGCGgGUCCGUCAggUCCUc -3'
miRNA:   3'- caGUaaCUGUCGCgCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 35001 0.73 0.725578
Target:  5'- gGUCAUgGACgAGCGCGgCCGCUucuUCCUg -3'
miRNA:   3'- -CAGUAaCUG-UCGCGCaGGCGGu--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 74658 0.72 0.735192
Target:  5'- gGUCcg-GACcgcGGCGCGUCCGCCGUagcgcagggUCCg -3'
miRNA:   3'- -CAGuaaCUG---UCGCGCAGGCGGUA---------GGG- -5'
16229 5' -55.1 NC_004065.1 + 22913 0.72 0.772702
Target:  5'- gGUCAgUGGCGGCG-GUCgGCgGUUCCg -3'
miRNA:   3'- -CAGUaACUGUCGCgCAGgCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 119276 0.71 0.799606
Target:  5'- uGUCA--GGCGGCGCcagaaggggacGUCCGCCAaUCCa -3'
miRNA:   3'- -CAGUaaCUGUCGCG-----------CAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 94636 0.71 0.808295
Target:  5'- gGUCGggcgcgGcCGGCGCGUCa-CCGUCCCu -3'
miRNA:   3'- -CAGUaa----CuGUCGCGCAGgcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 199247 0.71 0.825208
Target:  5'- cGUCAUcGuCGGCguccGCGUCCGCCGaCCUc -3'
miRNA:   3'- -CAGUAaCuGUCG----CGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 140688 0.7 0.833415
Target:  5'- uGUCGUgccucgaguucUGGCAGCGCGUCCucagaacucgcuGCCGcgCUCg -3'
miRNA:   3'- -CAGUA-----------ACUGUCGCGCAGG------------CGGUa-GGG- -5'
16229 5' -55.1 NC_004065.1 + 90323 0.7 0.833415
Target:  5'- cUCAUcucGGCaAGCGCGUCCGCgaacuCGUCCg -3'
miRNA:   3'- cAGUAa--CUG-UCGCGCAGGCG-----GUAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.