miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 175502 0.7 0.841449
Target:  5'- cGUCAguaGACAGaaCGCGUCCGCCGa--- -3'
miRNA:   3'- -CAGUaa-CUGUC--GCGCAGGCGGUaggg -5'
16229 5' -55.1 NC_004065.1 + 133247 0.7 0.841449
Target:  5'- aGUCGUcgaaGACGGcCGCGaugccgccUCCGCCGUCgCCc -3'
miRNA:   3'- -CAGUAa---CUGUC-GCGC--------AGGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 131763 0.7 0.841449
Target:  5'- -----aGGC-GCGCGcccagggCCGCCGUCCCg -3'
miRNA:   3'- caguaaCUGuCGCGCa------GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 15826 0.7 0.8493
Target:  5'- uGUCAcaGAUAGCGCGUCUGUUG-CCUa -3'
miRNA:   3'- -CAGUaaCUGUCGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 34106 0.7 0.856963
Target:  5'- aUCGgcGAUaaAGCGCcggcagaacgaGUCCGCCGUCUCg -3'
miRNA:   3'- cAGUaaCUG--UCGCG-----------CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 29847 0.7 0.856963
Target:  5'- -----aGGuCAGCgGCaUCCGCCAUCCCu -3'
miRNA:   3'- caguaaCU-GUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 185484 0.7 0.864432
Target:  5'- gGUCGggaGGCAGCGcCG-CCaCCGUCCCc -3'
miRNA:   3'- -CAGUaa-CUGUCGC-GCaGGcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 160905 0.7 0.8717
Target:  5'- ---cUUGuCGGCGCG-CCGCgCGUCCUg -3'
miRNA:   3'- caguAACuGUCGCGCaGGCG-GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 196204 0.7 0.871701
Target:  5'- cGUgGUUGAuggcCAGCuuGUCCGCguCGUCCCa -3'
miRNA:   3'- -CAgUAACU----GUCGcgCAGGCG--GUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 160204 0.69 0.878763
Target:  5'- cUCGU--ACAGuCGCuucauGUCCGCCGUCCUc -3'
miRNA:   3'- cAGUAacUGUC-GCG-----CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 209088 0.69 0.878763
Target:  5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3'
miRNA:   3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 220512 0.69 0.878764
Target:  5'- -aCGU--ACAGUGCGUgCGgCGUCCCg -3'
miRNA:   3'- caGUAacUGUCGCGCAgGCgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 87527 0.69 0.88153
Target:  5'- uGUCGacgcGCAGCGCGUgccagacgggguuagCCGCCuGUCCCc -3'
miRNA:   3'- -CAGUaac-UGUCGCGCA---------------GGCGG-UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 41850 0.69 0.885617
Target:  5'- --uGUUGACGGUGaCGaugCUGCCGUUCCu -3'
miRNA:   3'- cagUAACUGUCGC-GCa--GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 64009 0.69 0.885617
Target:  5'- -aCggUGACGGCcucccGCGUCCGUCGuuUCCUg -3'
miRNA:   3'- caGuaACUGUCG-----CGCAGGCGGU--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 126884 0.69 0.885617
Target:  5'- gGUCGUggaacaUGAUcGCGUGagCCGCCGUCgCCa -3'
miRNA:   3'- -CAGUA------ACUGuCGCGCa-GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 151590 0.69 0.885617
Target:  5'- cGUCAUcGACgAGUGCGg-CGUCAUCCUc -3'
miRNA:   3'- -CAGUAaCUG-UCGCGCagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 199313 0.69 0.892255
Target:  5'- cGUCGUU--CAaCGCGUCCGCCAcCUCg -3'
miRNA:   3'- -CAGUAAcuGUcGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 124257 0.69 0.898676
Target:  5'- -----cGACAGCGgGaagCCGCCGUCgCa -3'
miRNA:   3'- caguaaCUGUCGCgCa--GGCGGUAGgG- -5'
16229 5' -55.1 NC_004065.1 + 169185 0.69 0.898676
Target:  5'- cUCGaUGugAGUGUucgCCGCCGUCCUc -3'
miRNA:   3'- cAGUaACugUCGCGca-GGCGGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.