miRNA display CGI


Results 41 - 60 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 171958 0.69 0.904875
Target:  5'- uGUCAUUG-CAGCGCa--CGCaCGUCCa -3'
miRNA:   3'- -CAGUAACuGUCGCGcagGCG-GUAGGg -5'
16229 5' -55.1 NC_004065.1 + 164940 0.69 0.904875
Target:  5'- aGUCGUUGAacGCGUGUaucugUCGCgAUCCCc -3'
miRNA:   3'- -CAGUAACUguCGCGCA-----GGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 133730 0.68 0.910263
Target:  5'- aGUCGUgugGACGGCGUccgugacgccccuGgccgccCCGCCGUCCa -3'
miRNA:   3'- -CAGUAa--CUGUCGCG-------------Ca-----GGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 91417 0.68 0.910851
Target:  5'- cGUCGUaaGACAGCGUGUucaccgauuUCGCUacauAUCCCg -3'
miRNA:   3'- -CAGUAa-CUGUCGCGCA---------GGCGG----UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 186681 0.68 0.9166
Target:  5'- uGUCGggGACgcGGCGCGUggggcguccCCGCCGggCCa -3'
miRNA:   3'- -CAGUaaCUG--UCGCGCA---------GGCGGUagGG- -5'
16229 5' -55.1 NC_004065.1 + 119388 0.68 0.9166
Target:  5'- aUCGUUGGCccAGCGCaccuuGUggaCCGUCAUCCUg -3'
miRNA:   3'- cAGUAACUG--UCGCG-----CA---GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 107109 0.68 0.922122
Target:  5'- uGUCGcggcUGAuCGGCGCGgugaUCC-CCAUCCCc -3'
miRNA:   3'- -CAGUa---ACU-GUCGCGC----AGGcGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 128427 0.68 0.922122
Target:  5'- uUCAUaugcGAC-GCGCG-CCGCCucUCCCu -3'
miRNA:   3'- cAGUAa---CUGuCGCGCaGGCGGu-AGGG- -5'
16229 5' -55.1 NC_004065.1 + 52046 0.68 0.924267
Target:  5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3'
miRNA:   3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5'
16229 5' -55.1 NC_004065.1 + 137972 0.68 0.927415
Target:  5'- cUCGUUG-CA-CGCGUUCGUCAggCCCa -3'
miRNA:   3'- cAGUAACuGUcGCGCAGGCGGUa-GGG- -5'
16229 5' -55.1 NC_004065.1 + 161326 0.68 0.927415
Target:  5'- uUCGUcGACAGCaGC-UCCGUCAUCUUc -3'
miRNA:   3'- cAGUAaCUGUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 35561 0.68 0.93248
Target:  5'- -gCGUgaGCGGCgGCG-CCGCCGUgCCCa -3'
miRNA:   3'- caGUAacUGUCG-CGCaGGCGGUA-GGG- -5'
16229 5' -55.1 NC_004065.1 + 142065 0.68 0.932481
Target:  5'- -aUAUcGACAGCGCGUUCGgCggGUCCg -3'
miRNA:   3'- caGUAaCUGUCGCGCAGGCgG--UAGGg -5'
16229 5' -55.1 NC_004065.1 + 181356 0.68 0.937317
Target:  5'- uUCcagGACGGCcuGCGUCgGCUcgAUCCCa -3'
miRNA:   3'- cAGuaaCUGUCG--CGCAGgCGG--UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 109899 0.67 0.940567
Target:  5'- cGUCGggGGguccCGGCuCGUCCGCCgcggccgccgucgcGUCCCg -3'
miRNA:   3'- -CAGUaaCU----GUCGcGCAGGCGG--------------UAGGG- -5'
16229 5' -55.1 NC_004065.1 + 37159 0.67 0.941926
Target:  5'- aUCGgcGGCAGCaGUGUcagcaacuccgCCGCCGUCaCCg -3'
miRNA:   3'- cAGUaaCUGUCG-CGCA-----------GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 101608 0.67 0.941926
Target:  5'- cUCggUGGCGGCGcCG-CCGCCGcUgCCg -3'
miRNA:   3'- cAGuaACUGUCGC-GCaGGCGGU-AgGG- -5'
16229 5' -55.1 NC_004065.1 + 194267 0.67 0.94631
Target:  5'- -aCGUUcGACAGgGCca-CGCCGUCCUg -3'
miRNA:   3'- caGUAA-CUGUCgCGcagGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 57907 0.67 0.94631
Target:  5'- uGUCGUUGAagUAGCcaccGCGgucagagCCGCC-UCCCc -3'
miRNA:   3'- -CAGUAACU--GUCG----CGCa------GGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 112991 0.67 0.94631
Target:  5'- cUUcgUGACGGCGU--UCGCgAUCCCc -3'
miRNA:   3'- cAGuaACUGUCGCGcaGGCGgUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.