Results 41 - 60 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 107109 | 0.68 | 0.922122 |
Target: 5'- uGUCGcggcUGAuCGGCGCGgugaUCC-CCAUCCCc -3' miRNA: 3'- -CAGUa---ACU-GUCGCGC----AGGcGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 186681 | 0.68 | 0.9166 |
Target: 5'- uGUCGggGACgcGGCGCGUggggcguccCCGCCGggCCa -3' miRNA: 3'- -CAGUaaCUG--UCGCGCA---------GGCGGUagGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 119388 | 0.68 | 0.9166 |
Target: 5'- aUCGUUGGCccAGCGCaccuuGUggaCCGUCAUCCUg -3' miRNA: 3'- cAGUAACUG--UCGCG-----CA---GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 91417 | 0.68 | 0.910851 |
Target: 5'- cGUCGUaaGACAGCGUGUucaccgauuUCGCUacauAUCCCg -3' miRNA: 3'- -CAGUAa-CUGUCGCGCA---------GGCGG----UAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 133730 | 0.68 | 0.910263 |
Target: 5'- aGUCGUgugGACGGCGUccgugacgccccuGgccgccCCGCCGUCCa -3' miRNA: 3'- -CAGUAa--CUGUCGCG-------------Ca-----GGCGGUAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 171958 | 0.69 | 0.904875 |
Target: 5'- uGUCAUUG-CAGCGCa--CGCaCGUCCa -3' miRNA: 3'- -CAGUAACuGUCGCGcagGCG-GUAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 164940 | 0.69 | 0.904875 |
Target: 5'- aGUCGUUGAacGCGUGUaucugUCGCgAUCCCc -3' miRNA: 3'- -CAGUAACUguCGCGCA-----GGCGgUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 124257 | 0.69 | 0.898676 |
Target: 5'- -----cGACAGCGgGaagCCGCCGUCgCa -3' miRNA: 3'- caguaaCUGUCGCgCa--GGCGGUAGgG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 169185 | 0.69 | 0.898676 |
Target: 5'- cUCGaUGugAGUGUucgCCGCCGUCCUc -3' miRNA: 3'- cAGUaACugUCGCGca-GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 199313 | 0.69 | 0.892255 |
Target: 5'- cGUCGUU--CAaCGCGUCCGCCAcCUCg -3' miRNA: 3'- -CAGUAAcuGUcGCGCAGGCGGUaGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 41850 | 0.69 | 0.885617 |
Target: 5'- --uGUUGACGGUGaCGaugCUGCCGUUCCu -3' miRNA: 3'- cagUAACUGUCGC-GCa--GGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 64009 | 0.69 | 0.885617 |
Target: 5'- -aCggUGACGGCcucccGCGUCCGUCGuuUCCUg -3' miRNA: 3'- caGuaACUGUCG-----CGCAGGCGGU--AGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 151590 | 0.69 | 0.885617 |
Target: 5'- cGUCAUcGACgAGUGCGg-CGUCAUCCUc -3' miRNA: 3'- -CAGUAaCUG-UCGCGCagGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 126884 | 0.69 | 0.885617 |
Target: 5'- gGUCGUggaacaUGAUcGCGUGagCCGCCGUCgCCa -3' miRNA: 3'- -CAGUA------ACUGuCGCGCa-GGCGGUAG-GG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 87527 | 0.69 | 0.88153 |
Target: 5'- uGUCGacgcGCAGCGCGUgccagacgggguuagCCGCCuGUCCCc -3' miRNA: 3'- -CAGUaac-UGUCGCGCA---------------GGCGG-UAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 220512 | 0.69 | 0.878764 |
Target: 5'- -aCGU--ACAGUGCGUgCGgCGUCCCg -3' miRNA: 3'- caGUAacUGUCGCGCAgGCgGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 209088 | 0.69 | 0.878763 |
Target: 5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3' miRNA: 3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 160204 | 0.69 | 0.878763 |
Target: 5'- cUCGU--ACAGuCGCuucauGUCCGCCGUCCUc -3' miRNA: 3'- cAGUAacUGUC-GCG-----CAGGCGGUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 196204 | 0.7 | 0.871701 |
Target: 5'- cGUgGUUGAuggcCAGCuuGUCCGCguCGUCCCa -3' miRNA: 3'- -CAgUAACU----GUCGcgCAGGCG--GUAGGG- -5' |
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16229 | 5' | -55.1 | NC_004065.1 | + | 160905 | 0.7 | 0.8717 |
Target: 5'- ---cUUGuCGGCGCG-CCGCgCGUCCUg -3' miRNA: 3'- caguAACuGUCGCGCaGGCG-GUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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