Results 61 - 80 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 185484 | 0.7 | 0.864432 |
Target: 5'- gGUCGggaGGCAGCGcCG-CCaCCGUCCCc -3' miRNA: 3'- -CAGUaa-CUGUCGC-GCaGGcGGUAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 29847 | 0.7 | 0.856963 |
Target: 5'- -----aGGuCAGCgGCaUCCGCCAUCCCu -3' miRNA: 3'- caguaaCU-GUCG-CGcAGGCGGUAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 34106 | 0.7 | 0.856963 |
Target: 5'- aUCGgcGAUaaAGCGCcggcagaacgaGUCCGCCGUCUCg -3' miRNA: 3'- cAGUaaCUG--UCGCG-----------CAGGCGGUAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 15826 | 0.7 | 0.8493 |
Target: 5'- uGUCAcaGAUAGCGCGUCUGUUG-CCUa -3' miRNA: 3'- -CAGUaaCUGUCGCGCAGGCGGUaGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 133247 | 0.7 | 0.841449 |
Target: 5'- aGUCGUcgaaGACGGcCGCGaugccgccUCCGCCGUCgCCc -3' miRNA: 3'- -CAGUAa---CUGUC-GCGC--------AGGCGGUAG-GG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 131763 | 0.7 | 0.841449 |
Target: 5'- -----aGGC-GCGCGcccagggCCGCCGUCCCg -3' miRNA: 3'- caguaaCUGuCGCGCa------GGCGGUAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 175502 | 0.7 | 0.841449 |
Target: 5'- cGUCAguaGACAGaaCGCGUCCGCCGa--- -3' miRNA: 3'- -CAGUaa-CUGUC--GCGCAGGCGGUaggg -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 90323 | 0.7 | 0.833415 |
Target: 5'- cUCAUcucGGCaAGCGCGUCCGCgaacuCGUCCg -3' miRNA: 3'- cAGUAa--CUG-UCGCGCAGGCG-----GUAGGg -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 140688 | 0.7 | 0.833415 |
Target: 5'- uGUCGUgccucgaguucUGGCAGCGCGUCCucagaacucgcuGCCGcgCUCg -3' miRNA: 3'- -CAGUA-----------ACUGUCGCGCAGG------------CGGUa-GGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 199247 | 0.71 | 0.825208 |
Target: 5'- cGUCAUcGuCGGCguccGCGUCCGCCGaCCUc -3' miRNA: 3'- -CAGUAaCuGUCG----CGCAGGCGGUaGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 94636 | 0.71 | 0.808295 |
Target: 5'- gGUCGggcgcgGcCGGCGCGUCa-CCGUCCCu -3' miRNA: 3'- -CAGUaa----CuGUCGCGCAGgcGGUAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 119276 | 0.71 | 0.799606 |
Target: 5'- uGUCA--GGCGGCGCcagaaggggacGUCCGCCAaUCCa -3' miRNA: 3'- -CAGUaaCUGUCGCG-----------CAGGCGGUaGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 22913 | 0.72 | 0.772702 |
Target: 5'- gGUCAgUGGCGGCG-GUCgGCgGUUCCg -3' miRNA: 3'- -CAGUaACUGUCGCgCAGgCGgUAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 74658 | 0.72 | 0.735192 |
Target: 5'- gGUCcg-GACcgcGGCGCGUCCGCCGUagcgcagggUCCg -3' miRNA: 3'- -CAGuaaCUG---UCGCGCAGGCGGUA---------GGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 35001 | 0.73 | 0.725578 |
Target: 5'- gGUCAUgGACgAGCGCGgCCGCUucuUCCUg -3' miRNA: 3'- -CAGUAaCUG-UCGCGCaGGCGGu--AGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 164386 | 0.73 | 0.715888 |
Target: 5'- -gCAgcGGCAGCGgGUCCGUCAggUCCUc -3' miRNA: 3'- caGUaaCUGUCGCgCAGGCGGU--AGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 199932 | 0.73 | 0.714915 |
Target: 5'- cGUCccUGACAcaucagcGCGCGcUCCGCCAcggcggUCCCg -3' miRNA: 3'- -CAGuaACUGU-------CGCGC-AGGCGGU------AGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 72301 | 0.74 | 0.666581 |
Target: 5'- -aCGUUGACAucGcCGCGaCCGCgGUCCCg -3' miRNA: 3'- caGUAACUGU--C-GCGCaGGCGgUAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 139240 | 0.74 | 0.646614 |
Target: 5'- cGUCcugccggGACAGCGCGU-CGCC-UCCCu -3' miRNA: 3'- -CAGuaa----CUGUCGCGCAgGCGGuAGGG- -5' |
|||||||
16229 | 5' | -55.1 | NC_004065.1 | + | 116107 | 0.75 | 0.6166 |
Target: 5'- cGUCGUcGACAcGCGCGaucUCCGCCcUCUCg -3' miRNA: 3'- -CAGUAaCUGU-CGCGC---AGGCGGuAGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home