Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16229 | 5' | -55.1 | NC_004065.1 | + | 99366 | 0.76 | 0.537535 |
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Target: 5'- -gCGUUGGCAGCGaCGgcgCCGaCUGUCCCg -3' miRNA: 3'- caGUAACUGUCGC-GCa--GGC-GGUAGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 150638 | 0.77 | 0.489881 |
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Target: 5'- aUCGUgUGuuuCAGCGCGUCCGCCcagAUCUCg -3' miRNA: 3'- cAGUA-ACu--GUCGCGCAGGCGG---UAGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 163384 | 0.77 | 0.486151 |
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Target: 5'- aUCAgcGuCAGCGCGUCCGCCAcgcagcgccgcagCCCg -3' miRNA: 3'- cAGUaaCuGUCGCGCAGGCGGUa------------GGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 64643 | 0.77 | 0.480583 |
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Target: 5'- -cCAUcGACcGCGCGUCCGCCGUgCUg -3' miRNA: 3'- caGUAaCUGuCGCGCAGGCGGUAgGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 210518 | 0.77 | 0.480582 |
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Target: 5'- -cCGUUcGGCAGCGguUCCGCCGUCCCc -3' miRNA: 3'- caGUAA-CUGUCGCgcAGGCGGUAGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 35012 | 0.8 | 0.345499 |
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Target: 5'- cGUCGUUGGCGGCGCGUCgaaCAUCUCa -3' miRNA: 3'- -CAGUAACUGUCGCGCAGgcgGUAGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 222854 | 1.11 | 0.004038 |
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Target: 5'- cGUCAUUGACAGCGCGUCCGCCAUCCCc -3' miRNA: 3'- -CAGUAACUGUCGCGCAGGCGGUAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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