miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16229 5' -55.1 NC_004065.1 + 2550 0.66 0.961639
Target:  5'- aUCGgucGACGGC-CGUCCGUCuUCCg -3'
miRNA:   3'- cAGUaa-CUGUCGcGCAGGCGGuAGGg -5'
16229 5' -55.1 NC_004065.1 + 6920 0.66 0.970928
Target:  5'- uUCAgcugcggGcACGGCcucgGCGUCCGCCGUCg- -3'
miRNA:   3'- cAGUaa-----C-UGUCG----CGCAGGCGGUAGgg -5'
16229 5' -55.1 NC_004065.1 + 15826 0.7 0.8493
Target:  5'- uGUCAcaGAUAGCGCGUCUGUUG-CCUa -3'
miRNA:   3'- -CAGUaaCUGUCGCGCAGGCGGUaGGG- -5'
16229 5' -55.1 NC_004065.1 + 15907 0.66 0.970928
Target:  5'- uUUAUUGuCGGCGCGUgCGaCCggCCg -3'
miRNA:   3'- cAGUAACuGUCGCGCAgGC-GGuaGGg -5'
16229 5' -55.1 NC_004065.1 + 22913 0.72 0.772702
Target:  5'- gGUCAgUGGCGGCG-GUCgGCgGUUCCg -3'
miRNA:   3'- -CAGUaACUGUCGCgCAGgCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 29847 0.7 0.856963
Target:  5'- -----aGGuCAGCgGCaUCCGCCAUCCCu -3'
miRNA:   3'- caguaaCU-GUCG-CGcAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 31058 0.67 0.95047
Target:  5'- aGUCuGUUGACGGCGUa--CGCCuUCCUc -3'
miRNA:   3'- -CAG-UAACUGUCGCGcagGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 32260 0.66 0.973631
Target:  5'- aUCAUcgGACGGCuccgaGUGcCCGCUGUCCg -3'
miRNA:   3'- cAGUAa-CUGUCG-----CGCaGGCGGUAGGg -5'
16229 5' -55.1 NC_004065.1 + 34106 0.7 0.856963
Target:  5'- aUCGgcGAUaaAGCGCcggcagaacgaGUCCGCCGUCUCg -3'
miRNA:   3'- cAGUaaCUG--UCGCG-----------CAGGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 35001 0.73 0.725578
Target:  5'- gGUCAUgGACgAGCGCGgCCGCUucuUCCUg -3'
miRNA:   3'- -CAGUAaCUG-UCGCGCaGGCGGu--AGGG- -5'
16229 5' -55.1 NC_004065.1 + 35012 0.8 0.345499
Target:  5'- cGUCGUUGGCGGCGCGUCgaaCAUCUCa -3'
miRNA:   3'- -CAGUAACUGUCGCGCAGgcgGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 35561 0.68 0.93248
Target:  5'- -gCGUgaGCGGCgGCG-CCGCCGUgCCCa -3'
miRNA:   3'- caGUAacUGUCG-CGCaGGCGGUA-GGG- -5'
16229 5' -55.1 NC_004065.1 + 37159 0.67 0.941926
Target:  5'- aUCGgcGGCAGCaGUGUcagcaacuccgCCGCCGUCaCCg -3'
miRNA:   3'- cAGUaaCUGUCG-CGCA-----------GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 37210 0.66 0.961639
Target:  5'- cUCAagcGCAGCGCccagacgCCGCCGUCuCCa -3'
miRNA:   3'- cAGUaacUGUCGCGca-----GGCGGUAG-GG- -5'
16229 5' -55.1 NC_004065.1 + 39980 0.67 0.95047
Target:  5'- -cCGUUGACGGUGUcuguacaccgCCGCCAacgcuauuacuUCCCg -3'
miRNA:   3'- caGUAACUGUCGCGca--------GGCGGU-----------AGGG- -5'
16229 5' -55.1 NC_004065.1 + 41850 0.69 0.885617
Target:  5'- --uGUUGACGGUGaCGaugCUGCCGUUCCu -3'
miRNA:   3'- cagUAACUGUCGC-GCa--GGCGGUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 44536 0.66 0.976146
Target:  5'- -cCGggGACGGUgGCGgcgCUGCC-UCCCg -3'
miRNA:   3'- caGUaaCUGUCG-CGCa--GGCGGuAGGG- -5'
16229 5' -55.1 NC_004065.1 + 46001 0.66 0.970928
Target:  5'- -gCcgUGGCGGCGUugaacucggGUCUGCCGauggCCCc -3'
miRNA:   3'- caGuaACUGUCGCG---------CAGGCGGUa---GGG- -5'
16229 5' -55.1 NC_004065.1 + 50334 0.67 0.95047
Target:  5'- ----gUGGCAcGCGUGgccaccgCCGCgAUCCCg -3'
miRNA:   3'- caguaACUGU-CGCGCa------GGCGgUAGGG- -5'
16229 5' -55.1 NC_004065.1 + 52046 0.68 0.924267
Target:  5'- cUCGUUGGCAGUcuccucggcgaagcgGCGUUCGCgAgaacCCCa -3'
miRNA:   3'- cAGUAACUGUCG---------------CGCAGGCGgUa---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.