Results 81 - 87 of 87 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 16229 | 5' | -55.1 | NC_004065.1 | + | 209088 | 0.69 | 0.878763 |
|
Target: 5'- gGUCGagGAcCAGUGCGcCCGCC-UCCa -3' miRNA: 3'- -CAGUaaCU-GUCGCGCaGGCGGuAGGg -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 210518 | 0.77 | 0.480582 |
|
Target: 5'- -cCGUUcGGCAGCGguUCCGCCGUCCCc -3' miRNA: 3'- caGUAA-CUGUCGCgcAGGCGGUAGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 212134 | 0.67 | 0.95047 |
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Target: 5'- aGUCucucGACGG-GCGUCCGUCcgCCg -3' miRNA: 3'- -CAGuaa-CUGUCgCGCAGGCGGuaGGg -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 220512 | 0.69 | 0.878764 |
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Target: 5'- -aCGU--ACAGUGCGUgCGgCGUCCCg -3' miRNA: 3'- caGUAacUGUCGCGCAgGCgGUAGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 222854 | 1.11 | 0.004038 |
|
Target: 5'- cGUCAUUGACAGCGCGUCCGCCAUCCCc -3' miRNA: 3'- -CAGUAACUGUCGCGCAGGCGGUAGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 222956 | 0.66 | 0.970928 |
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Target: 5'- uUCg--GGCAGCGCGaaCGaCCAgcUCCCg -3' miRNA: 3'- cAGuaaCUGUCGCGCagGC-GGU--AGGG- -5' |
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| 16229 | 5' | -55.1 | NC_004065.1 | + | 229678 | 0.66 | 0.970928 |
|
Target: 5'- cGUCgg-GGC-GCGCGUCCGCUcggcgAUCUa -3' miRNA: 3'- -CAGuaaCUGuCGCGCAGGCGG-----UAGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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